Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SOI73_RS17380 Genome accession   NZ_CP139262
Coordinates   3639846..3640655 (+) Length   269 a.a.
NCBI ID   WP_002117088.1    Uniprot ID   A0A013UCU5
Organism   Acinetobacter pittii strain HUM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3634846..3645655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI73_RS17345 (SOI73_17345) - 3635404..3635559 (-) 156 Protein_3375 hypothetical protein -
  SOI73_RS17350 (SOI73_17350) rpoZ 3635598..3635876 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI73_RS17355 (SOI73_17355) gmk 3635949..3636578 (-) 630 WP_002116973.1 guanylate kinase -
  SOI73_RS17360 (SOI73_17360) ispH 3636701..3637651 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI73_RS17365 (SOI73_17365) fimU 3637821..3638294 (+) 474 WP_016802756.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI73_RS17370 (SOI73_17370) pilV 3638288..3638848 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  SOI73_RS17375 (SOI73_17375) pilW 3638848..3639849 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  SOI73_RS17380 (SOI73_17380) pilX 3639846..3640655 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI73_RS17385 (SOI73_17385) pilY1 3640667..3644521 (+) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI73_RS17390 (SOI73_17390) pilY2 3644532..3645014 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  SOI73_RS17395 (SOI73_17395) pilE 3645011..3645436 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28518.31 Da        Isoelectric Point: 7.2645

>NTDB_id=908494 SOI73_RS17380 WP_002117088.1 3639846..3640655(+) (pilX) [Acinetobacter pittii strain HUM1]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908494 SOI73_RS17380 WP_002117088.1 3639846..3640655(+) (pilX) [Acinetobacter pittii strain HUM1]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGGGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTGAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAATCCCGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCTGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTGAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013UCU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914