Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SOI73_RS17365 Genome accession   NZ_CP139262
Coordinates   3637821..3638294 (+) Length   157 a.a.
NCBI ID   WP_016802756.1    Uniprot ID   A0A1C2SAU9
Organism   Acinetobacter pittii strain HUM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3632821..3643294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI73_RS17340 (SOI73_17340) spoT 3633283..3635388 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  SOI73_RS17345 (SOI73_17345) - 3635404..3635559 (-) 156 Protein_3375 hypothetical protein -
  SOI73_RS17350 (SOI73_17350) rpoZ 3635598..3635876 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI73_RS17355 (SOI73_17355) gmk 3635949..3636578 (-) 630 WP_002116973.1 guanylate kinase -
  SOI73_RS17360 (SOI73_17360) ispH 3636701..3637651 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI73_RS17365 (SOI73_17365) fimU 3637821..3638294 (+) 474 WP_016802756.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI73_RS17370 (SOI73_17370) pilV 3638288..3638848 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  SOI73_RS17375 (SOI73_17375) pilW 3638848..3639849 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  SOI73_RS17380 (SOI73_17380) pilX 3639846..3640655 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16939.62 Da        Isoelectric Point: 7.7942

>NTDB_id=908491 SOI73_RS17365 WP_016802756.1 3637821..3638294(+) (fimU) [Acinetobacter pittii strain HUM1]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=908491 SOI73_RS17365 WP_016802756.1 3637821..3638294(+) (fimU) [Acinetobacter pittii strain HUM1]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2SAU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879