Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   SOI73_RS17375 Genome accession   NZ_CP139262
Coordinates   3638848..3639849 (+) Length   333 a.a.
NCBI ID   WP_002116811.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3633848..3644849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI73_RS17345 (SOI73_17345) - 3635404..3635559 (-) 156 Protein_3375 hypothetical protein -
  SOI73_RS17350 (SOI73_17350) rpoZ 3635598..3635876 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI73_RS17355 (SOI73_17355) gmk 3635949..3636578 (-) 630 WP_002116973.1 guanylate kinase -
  SOI73_RS17360 (SOI73_17360) ispH 3636701..3637651 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI73_RS17365 (SOI73_17365) fimU 3637821..3638294 (+) 474 WP_016802756.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI73_RS17370 (SOI73_17370) pilV 3638288..3638848 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  SOI73_RS17375 (SOI73_17375) pilW 3638848..3639849 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  SOI73_RS17380 (SOI73_17380) pilX 3639846..3640655 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI73_RS17385 (SOI73_17385) pilY1 3640667..3644521 (+) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35802.50 Da        Isoelectric Point: 6.6395

>NTDB_id=908493 SOI73_RS17375 WP_002116811.1 3638848..3639849(+) (pilW) [Acinetobacter pittii strain HUM1]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTASTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQMSVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=908493 SOI73_RS17375 WP_002116811.1 3638848..3639849(+) (pilW) [Acinetobacter pittii strain HUM1]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTGGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACAACCCCTTGGGGCGGTGTTGTATTAACTGCTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGCGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACAAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGACTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATGTCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85