Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SOI73_RS16675 Genome accession   NZ_CP139262
Coordinates   3504771..3505358 (+) Length   195 a.a.
NCBI ID   WP_002122021.1    Uniprot ID   A0A8I1HCN3
Organism   Acinetobacter pittii strain HUM1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3499771..3510358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI73_RS16650 (SOI73_16650) - 3499841..3500647 (-) 807 WP_002121905.1 SDR family NAD(P)-dependent oxidoreductase -
  SOI73_RS16655 (SOI73_16655) - 3500751..3501122 (-) 372 WP_002121939.1 MerR family transcriptional regulator -
  SOI73_RS16660 (SOI73_16660) tenA 3501189..3501863 (-) 675 WP_002121989.1 thiaminase II -
  SOI73_RS16665 (SOI73_16665) - 3502126..3503208 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  SOI73_RS16670 (SOI73_16670) yajR 3503355..3504719 (+) 1365 WP_023187735.1 MFS transporter -
  SOI73_RS16675 (SOI73_16675) ssb 3504771..3505358 (+) 588 WP_002122021.1 single-stranded DNA-binding protein Machinery gene
  SOI73_RS16680 (SOI73_16680) - 3505514..3506740 (+) 1227 WP_196257344.1 tyrosine-type recombinase/integrase -
  SOI73_RS16685 (SOI73_16685) - 3506733..3508289 (+) 1557 WP_196257343.1 site-specific integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21256.03 Da        Isoelectric Point: 6.4822

>NTDB_id=908484 SOI73_RS16675 WP_002122021.1 3504771..3505358(+) (ssb) [Acinetobacter pittii strain HUM1]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQSFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
SFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=908484 SOI73_RS16675 WP_002122021.1 3504771..3505358(+) (ssb) [Acinetobacter pittii strain HUM1]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAAGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
AGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.239

100

0.538
  ssb Vibrio cholerae strain A1552

42.857

100

0.446
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39