Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SOI70_RS00675 Genome accession   NZ_CP139258
Coordinates   128404..129213 (+) Length   269 a.a.
NCBI ID   WP_005078460.1    Uniprot ID   A0A009I3R3
Organism   Acinetobacter pittii strain HUM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 123404..134213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS00640 (SOI70_00640) - 123962..124117 (-) 156 WP_014207816.1 hypothetical protein -
  SOI70_RS00645 (SOI70_00645) rpoZ 124156..124434 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI70_RS00650 (SOI70_00650) gmk 124507..125136 (-) 630 WP_002116973.1 guanylate kinase -
  SOI70_RS00655 (SOI70_00655) ispH 125259..126209 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI70_RS00660 (SOI70_00660) fimU 126379..126852 (+) 474 WP_016802756.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI70_RS00665 (SOI70_00665) pilV 126846..127406 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  SOI70_RS00670 (SOI70_00670) pilW 127406..128407 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  SOI70_RS00675 (SOI70_00675) pilX 128404..129213 (+) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI70_RS00680 (SOI70_00680) pilY1 129225..133079 (+) 3855 WP_005078458.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI70_RS00685 (SOI70_00685) pilY2 133090..133572 (+) 483 WP_005078457.1 type IV pilin protein Machinery gene
  SOI70_RS00690 (SOI70_00690) pilE 133569..133994 (+) 426 WP_005078455.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28532.34 Da        Isoelectric Point: 7.2645

>NTDB_id=908417 SOI70_RS00675 WP_005078460.1 128404..129213(+) (pilX) [Acinetobacter pittii strain HUM3]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908417 SOI70_RS00675 WP_005078460.1 128404..129213(+) (pilX) [Acinetobacter pittii strain HUM3]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTCGTTGAAGATGGCGGCGTAGCGG
GTTTCTGCGATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTCACCCAAGTTGCTGTAAGTGTTCCAACAGAC
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACAGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I3R3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.074

100

0.911