Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SOI70_RS00685 Genome accession   NZ_CP139258
Coordinates   133090..133572 (+) Length   160 a.a.
NCBI ID   WP_005078457.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 128090..138572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS00675 (SOI70_00675) pilX 128404..129213 (+) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI70_RS00680 (SOI70_00680) pilY1 129225..133079 (+) 3855 WP_005078458.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI70_RS00685 (SOI70_00685) pilY2 133090..133572 (+) 483 WP_005078457.1 type IV pilin protein Machinery gene
  SOI70_RS00690 (SOI70_00690) pilE 133569..133994 (+) 426 WP_005078455.1 type IV pilin protein Machinery gene
  SOI70_RS00695 (SOI70_00695) rpsP 134142..134393 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI70_RS00700 (SOI70_00700) rimM 134413..134961 (+) 549 WP_005078453.1 ribosome maturation factor RimM -
  SOI70_RS00705 (SOI70_00705) trmD 135004..135759 (+) 756 WP_005078451.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI70_RS00710 (SOI70_00710) rplS 135979..136347 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI70_RS00715 (SOI70_00715) lip 136399..137340 (-) 942 WP_014207808.1 lipase family alpha/beta hydrolase -
  SOI70_RS00720 (SOI70_00720) - 137456..138487 (-) 1032 WP_005078447.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17522.82 Da        Isoelectric Point: 8.4721

>NTDB_id=908419 SOI70_RS00685 WP_005078457.1 133090..133572(+) (pilY2) [Acinetobacter pittii strain HUM3]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNLCETNSESWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=908419 SOI70_RS00685 WP_005078457.1 133090..133572(+) (pilY2) [Acinetobacter pittii strain HUM3]
ATGAATAAATATTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGGGGAACAGTCACTTGCAATTTATGTGAAACAAATAGTGAGAGTTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

41.86

100

0.45