Detailed information NTG0908416

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABRO87_RS22925
• Genome accession: NZ_CP158317
• Coordinates: 4665605..4666630 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 124611
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4660605..4671630

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRO87_RS22900 (ABRO87_22885)	metJ	4661042..4661359 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
ABRO87_RS22905 (ABRO87_22890)	yiiX	4661543..4662151 (+)	609	WP_106495437.1	YiiX family permuted papain-like enzyme	-
ABRO87_RS22910 (ABRO87_22895)	-	4662158..4662781 (+)	624	WP_000720774.1	TIGR02117 family protein	-
ABRO87_RS22915 (ABRO87_22900)	rpmE	4662836..4663048 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
ABRO87_RS22920 (ABRO87_22905)	priA	4663251..4665449 (+)	2199	WP_001300388.1	primosomal protein N'	Machinery gene
ABRO87_RS22925 (ABRO87_22910)	cytR	4665605..4666630 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ABRO87_RS22930 (ABRO87_22915)	ftsN	4666722..4667681 (+)	960	WP_000068828.1	cell division protein FtsN	-
ABRO87_RS22935 (ABRO87_22920)	hslV	4667774..4668304 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ABRO87_RS22940 (ABRO87_22925)	hslU	4668314..4669645 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
ABRO87_RS22945 (ABRO87_22930)	menA	4669712..4670638 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABRO87_RS22950 (ABRO87_22935)	rraA	4670731..4671216 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ABRO87_RS22955 (ABRO87_22940)	zapB	4671301..4671546 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=908416 ABRO87_RS22925 WP_000644904.1 4665605..4666630(+) (cytR) [Escherichia coli strain 124611]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=908416 ABRO87_RS22925 WP_000644904.1 4665605..4666630(+) (cytR) [Escherichia coli strain 124611]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628