Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SOI70_RS00660 Genome accession   NZ_CP139258
Coordinates   126379..126852 (+) Length   157 a.a.
NCBI ID   WP_016802756.1    Uniprot ID   A0A1C2SAU9
Organism   Acinetobacter pittii strain HUM3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 121379..131852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS00635 (SOI70_00635) spoT 121841..123946 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  SOI70_RS00640 (SOI70_00640) - 123962..124117 (-) 156 WP_014207816.1 hypothetical protein -
  SOI70_RS00645 (SOI70_00645) rpoZ 124156..124434 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI70_RS00650 (SOI70_00650) gmk 124507..125136 (-) 630 WP_002116973.1 guanylate kinase -
  SOI70_RS00655 (SOI70_00655) ispH 125259..126209 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI70_RS00660 (SOI70_00660) fimU 126379..126852 (+) 474 WP_016802756.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI70_RS00665 (SOI70_00665) pilV 126846..127406 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  SOI70_RS00670 (SOI70_00670) pilW 127406..128407 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  SOI70_RS00675 (SOI70_00675) pilX 128404..129213 (+) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16939.62 Da        Isoelectric Point: 7.7942

>NTDB_id=908414 SOI70_RS00660 WP_016802756.1 126379..126852(+) (fimU) [Acinetobacter pittii strain HUM3]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=908414 SOI70_RS00660 WP_016802756.1 126379..126852(+) (fimU) [Acinetobacter pittii strain HUM3]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2SAU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879