Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SOI70_RS00015 Genome accession   NZ_CP139258
Coordinates   2175..2762 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1..7762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI70_RS00010 (SOI70_00010) yajR 759..2123 (+) 1365 WP_005078603.1 MFS transporter -
  SOI70_RS00015 (SOI70_00015) ssb 2175..2762 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  SOI70_RS00020 (SOI70_00020) - 2803..3126 (-) 324 WP_002117414.1 AzlD domain-containing protein -
  SOI70_RS00025 (SOI70_00025) - 3123..3818 (-) 696 WP_005078600.1 AzlC family ABC transporter permease -
  SOI70_RS00030 (SOI70_00030) ydcN 3887..4435 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  SOI70_RS00035 (SOI70_00035) - 4741..6183 (+) 1443 WP_002117418.1 amino acid permease -
  SOI70_RS00040 (SOI70_00040) - 6248..7747 (-) 1500 WP_016805962.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=908407 SOI70_RS00015 WP_005066890.1 2175..2762(+) (ssb) [Acinetobacter pittii strain HUM3]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=908407 SOI70_RS00015 WP_005066890.1 2175..2762(+) (ssb) [Acinetobacter pittii strain HUM3]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCGCCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385