Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   SOI71_RS17580 Genome accession   NZ_CP139251
Coordinates   3696239..3697372 (+) Length   377 a.a.
NCBI ID   WP_104075615.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR53     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3691239..3702372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS17555 (SOI71_17545) - 3691494..3691700 (-) 207 WP_017387367.1 hypothetical protein -
  SOI71_RS17560 (SOI71_17550) oprC 3691754..3693868 (-) 2115 WP_063097944.1 TonB-dependent copper receptor -
  SOI71_RS17565 (SOI71_17555) - 3693941..3694366 (-) 426 WP_063097943.1 DUF2946 family protein -
  SOI71_RS17570 (SOI71_17560) def 3694411..3694941 (-) 531 WP_002114101.1 peptide deformylase -
  SOI71_RS17575 (SOI71_17565) tsaP 3695064..3696218 (+) 1155 WP_104075544.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  SOI71_RS17580 (SOI71_17570) dprA 3696239..3697372 (+) 1134 WP_104075615.1 DNA-processing protein DprA Machinery gene
  SOI71_RS17585 (SOI71_17575) yrdC 3697424..3697993 (+) 570 WP_104075545.1 L-threonylcarbamoyladenylate synthase -
  SOI71_RS17590 (SOI71_17580) - 3698386..3699306 (-) 921 WP_002114137.1 DMT family transporter -
  SOI71_RS17595 (SOI71_17585) - 3699411..3700064 (-) 654 WP_104075546.1 TetR/AcrR family transcriptional regulator -
  SOI71_RS17600 (SOI71_17590) nepI 3700200..3701414 (+) 1215 WP_060466371.1 MFS transporter -
  SOI71_RS17605 (SOI71_17595) yeaM 3701436..3702200 (+) 765 WP_104075547.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 41875.39 Da        Isoelectric Point: 6.4067

>NTDB_id=908357 SOI71_RS17580 WP_104075615.1 3696239..3697372(+) (dprA) [Acinetobacter pittii strain MCR53]
MLTQLSSHHYHTLKVWYLVQHSLASFKKIVDYFGSCEKAVQPAGLSQWRNLGLHANHLKRVDEFQTAQGQAQFEKLTEQI
QQYTDFILTVDDSGYPTQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQNSTEEAIVSSTPEI
PEHLINLYQSLDWVGQDIDQLVLHHSQPVAELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=908357 SOI71_RS17580 WP_104075615.1 3696239..3697372(+) (dprA) [Acinetobacter pittii strain MCR53]
ATGCTTACTCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAACACTCTTTAGCCAGCTTTAA
AAAAATTGTCGATTATTTTGGTAGCTGTGAAAAGGCGGTCCAACCTGCTGGATTATCTCAATGGCGCAATCTCGGGTTAC
ATGCTAATCATTTAAAACGCGTAGATGAATTTCAAACTGCTCAGGGTCAAGCTCAGTTTGAAAAACTAACTGAGCAGATC
CAGCAATATACCGACTTTATTTTAACGGTAGATGACTCAGGCTATCCCACTCAATTACTACCTTATACAGATTACCCACC
TATCATTTTTGGAAAAGGCCAAGCTCAAGCTTTGTTGCAACCACAAATTGCGATTGTCGGTAGTCGAAAACCAAGCCCCC
ATGGTCGTCAGGTTGCTTATGATTTTGCCTATTACTTAAGTGAAAAAGGTTTTTATGTGAGTAGTGGCTTGGCATATGGC
ATTGATGAAGCTGCACATCAAGGAGCTTCAGCTCATCAACGTACAATTGCAGTAACAGGAACTGGTTTAGACAGTACCTA
CCCTGCTCAAAATAAAAAACTTGCAGAACATATTTTAGCTCAAAACGGCGCGATTATTACTGAGTTTTTGCCTGGGACAC
CTCCACTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTGTTAGTGGTAGAAGCTACC
TTAAAAAGTGGTTCTCTCATCACTGCGAACAAAGCTGCCGAACAAGGTAAGACTGTATTTGCCATTCCTGGTCATATTTA
CAGTGAGTTTCATCAAGGTTGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTCGATCATCCTGAACAAATTATTGAAG
ACCTTGCTTTACCTACTCAATGGCAAAGTCAGCAACAAAACTCCACCGAGGAGGCTATAGTTTCTAGTACCCCAGAAATT
CCTGAGCATTTAATTAACCTTTATCAATCTTTAGACTGGGTCGGACAAGATATTGATCAGCTTGTCTTACATCACTCTCA
GCCTGTTGCAGAACTCACCTCTTCACTGATGGAACTAGAACTACTTGGTTTATGTATGCAACAATCAGGATTGTATTTAC
GTTGTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

90.451

100

0.905

  dprA Acinetobacter baumannii strain A118

89.92

100

0.899

  dprA Acinetobacter baylyi ADP1

71.391

100

0.721

  dprA Vibrio cholerae strain A1552

43.844

88.329

0.387