Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI71_RS17120 Genome accession   NZ_CP139251
Coordinates   3603143..3603469 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain MCR53     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3598143..3608469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS17100 (SOI71_17090) - 3598250..3598876 (-) 627 WP_104075807.1 FHA domain-containing protein -
  SOI71_RS17105 (SOI71_17095) gspD 3598917..3601187 (-) 2271 WP_104075806.1 type II secretion system secretin GspD -
  SOI71_RS17110 (SOI71_17100) - 3601229..3602065 (-) 837 WP_086355129.1 type II secretion system protein N -
  SOI71_RS17115 (SOI71_17105) gspN 3602065..3602808 (-) 744 WP_002121195.1 type II secretion system protein N -
  SOI71_RS17120 (SOI71_17110) hns 3603143..3603469 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI71_RS17125 (SOI71_17115) - 3603664..3604104 (-) 441 WP_017400180.1 acyl-CoA thioesterase -
  SOI71_RS17130 (SOI71_17120) - 3604112..3605305 (-) 1194 WP_205668773.1 heme biosynthesis protein HemY -
  SOI71_RS17135 (SOI71_17125) - 3605315..3606157 (-) 843 WP_104075805.1 hypothetical protein -
  SOI71_RS17140 (SOI71_17130) hemD 3606166..3606933 (-) 768 WP_104075804.1 uroporphyrinogen-III synthase -
  SOI71_RS17145 (SOI71_17135) hemC 3606937..3607854 (-) 918 WP_205668772.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=908351 SOI71_RS17120 WP_000801427.1 3603143..3603469(-) (hns) [Acinetobacter pittii strain MCR53]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908351 SOI71_RS17120 WP_000801427.1 3603143..3603469(-) (hns) [Acinetobacter pittii strain MCR53]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1