Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SOI71_RS00995 Genome accession   NZ_CP139251
Coordinates   218302..218889 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 213302..223889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS00970 (SOI71_00970) - 213379..214179 (-) 801 WP_104075398.1 SDR family NAD(P)-dependent oxidoreductase -
  SOI71_RS00975 (SOI71_00975) - 214283..214654 (-) 372 WP_005300704.1 MerR family transcriptional regulator -
  SOI71_RS00980 (SOI71_00980) tenA 214720..215394 (-) 675 WP_104075397.1 thiaminase II -
  SOI71_RS00985 (SOI71_00985) - 215657..216739 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  SOI71_RS00990 (SOI71_00990) yajR 216886..218250 (+) 1365 WP_005078603.1 MFS transporter -
  SOI71_RS00995 (SOI71_00995) ssb 218302..218889 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  SOI71_RS01000 (SOI71_01000) - 219045..220271 (+) 1227 WP_104075396.1 tyrosine-type recombinase/integrase -
  SOI71_RS01005 (SOI71_01005) - 220264..221820 (+) 1557 WP_104075395.1 site-specific integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=908319 SOI71_RS00995 WP_005066890.1 218302..218889(+) (ssb) [Acinetobacter pittii strain MCR53]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=908319 SOI71_RS00995 WP_005066890.1 218302..218889(+) (ssb) [Acinetobacter pittii strain MCR53]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCACCTAAAGCGCCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385