Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NC3_RS11345 Genome accession   NZ_AP025264
Coordinates   2223424..2223717 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain NC3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218424..2228717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC3_RS11295 (NC3_21940) sinR 2218583..2218918 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  NC3_RS11300 (NC3_21950) tasA 2218986..2219786 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  NC3_RS11305 (NC3_21960) sipW 2219845..2220417 (-) 573 WP_041091749.1 signal peptidase I SipW -
  NC3_RS11310 (NC3_21970) tapA 2220467..2220994 (-) 528 WP_046343966.1 amyloid fiber anchoring/assembly protein TapA -
  NC3_RS11315 (NC3_21980) - 2221247..2221573 (+) 327 WP_039166025.1 DUF3889 domain-containing protein -
  NC3_RS11320 (NC3_21990) - 2221607..2221807 (-) 201 WP_046343970.1 YqzE family protein -
  NC3_RS11325 (NC3_22000) - 2221868..2222251 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  NC3_RS11330 (NC3_22010) comGF 2222248..2222745 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  NC3_RS11335 (NC3_22020) comGE 2222687..2223001 (-) 315 WP_081114339.1 competence type IV pilus minor pilin ComGE -
  NC3_RS11340 (NC3_22030) comGD 2222985..2223431 (-) 447 WP_108611166.1 competence type IV pilus minor pilin ComGD -
  NC3_RS11345 (NC3_22040) comGC 2223424..2223717 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  NC3_RS11350 (NC3_22050) comGB 2223735..2224775 (-) 1041 WP_079920615.1 competence type IV pilus assembly protein ComGB -
  NC3_RS11355 (NC3_22060) comGA 2224756..2225826 (-) 1071 WP_220482485.1 competence type IV pilus ATPase ComGA Machinery gene
  NC3_RS11360 (NC3_22070) - 2226284..2227153 (-) 870 WP_007501231.1 STAS domain-containing protein -
  NC3_RS11370 (NC3_22080) - 2227379..2227759 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NC3_RS11375 (NC3_22090) - 2227972..2228214 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=90828 NC3_RS11345 WP_008342186.1 2223424..2223717(-) (comGC) [Bacillus altitudinis strain NC3]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=90828 NC3_RS11345 WP_008342186.1 2223424..2223717(-) (comGC) [Bacillus altitudinis strain NC3]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATTACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCAAATGGAAAAGCAATTTTCATTCAAAACGGCGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment