Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | NC3_RS11295 | Genome accession | NZ_AP025264 |
| Coordinates | 2218583..2218918 (+) | Length | 111 a.a. |
| NCBI ID | WP_017357978.1 | Uniprot ID | - |
| Organism | Bacillus altitudinis strain NC3 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2213583..2223918
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NC3_RS11275 (NC3_21900) | gcvT | 2214059..2215156 (-) | 1098 | WP_182489330.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| NC3_RS11280 (NC3_21910) | - | 2215718..2217388 (+) | 1671 | WP_144739932.1 | DEAD/DEAH box helicase | - |
| NC3_RS11285 (NC3_21920) | - | 2217403..2218200 (+) | 798 | WP_048001388.1 | YqhG family protein | - |
| NC3_RS11290 (NC3_21930) | - | 2218385..2218549 (+) | 165 | WP_008342197.1 | anti-repressor SinI family protein | - |
| NC3_RS11295 (NC3_21940) | sinR | 2218583..2218918 (+) | 336 | WP_017357978.1 | transcriptional regulator SinR | Regulator |
| NC3_RS11300 (NC3_21950) | tasA | 2218986..2219786 (-) | 801 | WP_008342195.1 | biofilm matrix protein TasA | - |
| NC3_RS11305 (NC3_21960) | sipW | 2219845..2220417 (-) | 573 | WP_041091749.1 | signal peptidase I SipW | - |
| NC3_RS11310 (NC3_21970) | tapA | 2220467..2220994 (-) | 528 | WP_046343966.1 | amyloid fiber anchoring/assembly protein TapA | - |
| NC3_RS11315 (NC3_21980) | - | 2221247..2221573 (+) | 327 | WP_039166025.1 | DUF3889 domain-containing protein | - |
| NC3_RS11320 (NC3_21990) | - | 2221607..2221807 (-) | 201 | WP_046343970.1 | YqzE family protein | - |
| NC3_RS11325 (NC3_22000) | - | 2221868..2222251 (-) | 384 | WP_017357982.1 | competence type IV pilus minor pilin ComGG | - |
| NC3_RS11330 (NC3_22010) | comGF | 2222248..2222745 (-) | 498 | WP_017367592.1 | competence type IV pilus minor pilin ComGF | - |
| NC3_RS11335 (NC3_22020) | comGE | 2222687..2223001 (-) | 315 | WP_081114339.1 | competence type IV pilus minor pilin ComGE | - |
| NC3_RS11340 (NC3_22030) | comGD | 2222985..2223431 (-) | 447 | WP_108611166.1 | competence type IV pilus minor pilin ComGD | - |
| NC3_RS11345 (NC3_22040) | comGC | 2223424..2223717 (-) | 294 | WP_008342186.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12936.47 Da Isoelectric Point: 4.8062
>NTDB_id=90827 NC3_RS11295 WP_017357978.1 2218583..2218918(+) (sinR) [Bacillus altitudinis strain NC3]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=90827 NC3_RS11295 WP_017357978.1 2218583..2218918(+) (sinR) [Bacillus altitudinis strain NC3]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |