Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SOI76_RS00965 Genome accession   NZ_CP139249
Coordinates   216542..217129 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 211542..222129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS00940 (SOI76_00940) - 212163..212516 (+) 354 WP_104080055.1 DUF1304 domain-containing protein -
  SOI76_RS00945 (SOI76_00945) glpM 212569..212910 (+) 342 WP_104080056.1 GlpM family protein -
  SOI76_RS00950 (SOI76_00950) tenA 212960..213634 (-) 675 WP_032057178.1 thiaminase II -
  SOI76_RS00955 (SOI76_00955) - 213897..214979 (+) 1083 WP_104080057.1 DUF475 domain-containing protein -
  SOI76_RS00960 (SOI76_00960) yajR 215126..216490 (+) 1365 WP_005066887.1 MFS transporter -
  SOI76_RS00965 (SOI76_00965) ssb 216542..217129 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  SOI76_RS00970 (SOI76_00970) - 217174..217497 (-) 324 WP_104080058.1 AzlD domain-containing protein -
  SOI76_RS00975 (SOI76_00975) - 217494..218189 (-) 696 WP_104080059.1 AzlC family ABC transporter permease -
  SOI76_RS00980 (SOI76_00980) ydcN 218258..218806 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  SOI76_RS00985 (SOI76_00985) - 219112..220554 (+) 1443 WP_104080060.1 amino acid permease -
  SOI76_RS00990 (SOI76_00990) - 220615..222114 (-) 1500 WP_205668443.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=908276 SOI76_RS00965 WP_005066890.1 216542..217129(+) (ssb) [Acinetobacter pittii strain MCR8900]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=908276 SOI76_RS00965 WP_005066890.1 216542..217129(+) (ssb) [Acinetobacter pittii strain MCR8900]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGATCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCACCTAAAGCTCCGCAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385