Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SOI69_RS16950 Genome accession   NZ_CP139248
Coordinates   3603631..3604113 (+) Length   160 a.a.
NCBI ID   WP_017400484.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3598631..3609113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS16940 (SOI69_16940) pilX 3598945..3599754 (+) 810 WP_320539685.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI69_RS16945 (SOI69_16945) pilY1 3599766..3603620 (+) 3855 WP_320539686.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI69_RS16950 (SOI69_16950) pilY2 3603631..3604113 (+) 483 WP_017400484.1 type IV pilin protein Machinery gene
  SOI69_RS16955 (SOI69_16955) pilE 3604110..3604535 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  SOI69_RS16960 (SOI69_16960) rpsP 3604683..3604934 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI69_RS16965 (SOI69_16965) rimM 3604954..3605502 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SOI69_RS16970 (SOI69_16970) trmD 3605545..3606300 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI69_RS16975 (SOI69_16975) rplS 3606520..3606888 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI69_RS16980 (SOI69_16980) lip 3606940..3607881 (-) 942 WP_014207808.1 lipase family alpha/beta hydrolase -
  SOI69_RS16985 (SOI69_16985) - 3607997..3609028 (-) 1032 WP_320539687.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17505.79 Da        Isoelectric Point: 8.4721

>NTDB_id=908269 SOI69_RS16950 WP_017400484.1 3603631..3604113(+) (pilY2) [Acinetobacter pittii strain HCG18]
MNKYYILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=908269 SOI69_RS16950 WP_017400484.1 3603631..3604113(+) (pilY2) [Acinetobacter pittii strain HCG18]
ATGAATAAATATTATATTCTGCGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGCTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCGGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

94.375

100

0.944
  comE Acinetobacter baylyi ADP1

41.279

100

0.444