Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   SOI69_RS16955 Genome accession   NZ_CP139248
Coordinates   3604110..3604535 (+) Length   141 a.a.
NCBI ID   WP_014207809.1    Uniprot ID   A0AAN4MGD4
Organism   Acinetobacter pittii strain HCG18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3599110..3609535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS16945 (SOI69_16945) pilY1 3599766..3603620 (+) 3855 WP_320539686.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI69_RS16950 (SOI69_16950) pilY2 3603631..3604113 (+) 483 WP_017400484.1 type IV pilin protein Machinery gene
  SOI69_RS16955 (SOI69_16955) pilE 3604110..3604535 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  SOI69_RS16960 (SOI69_16960) rpsP 3604683..3604934 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI69_RS16965 (SOI69_16965) rimM 3604954..3605502 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SOI69_RS16970 (SOI69_16970) trmD 3605545..3606300 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI69_RS16975 (SOI69_16975) rplS 3606520..3606888 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI69_RS16980 (SOI69_16980) lip 3606940..3607881 (-) 942 WP_014207808.1 lipase family alpha/beta hydrolase -
  SOI69_RS16985 (SOI69_16985) - 3607997..3609028 (-) 1032 WP_320539687.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15188.33 Da        Isoelectric Point: 7.1292

>NTDB_id=908270 SOI69_RS16955 WP_014207809.1 3604110..3604535(+) (pilE) [Acinetobacter pittii strain HCG18]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATITSIYGSSVSPQQG
QALYNLAFSSITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=908270 SOI69_RS16955 WP_014207809.1 3604110..3604535(+) (pilE) [Acinetobacter pittii strain HCG18]
ATGAAGAATGGTTTTACCTTAATAGAACTCATGATTGTAGTAGCAATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
GTATTTGCAGTATTTACGCAAAGGGCATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACGATTACTTCGATTTATGGTTCTAGTGTCAGTCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTTTCTAGCATAACTGATTCAAGCTGGGTGTTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.816

100

0.858
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511