Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SOI69_RS16940 Genome accession   NZ_CP139248
Coordinates   3598945..3599754 (+) Length   269 a.a.
NCBI ID   WP_320539685.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3593945..3604754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS16905 (SOI69_16905) - 3594503..3594658 (-) 156 Protein_3293 hypothetical protein -
  SOI69_RS16910 (SOI69_16910) rpoZ 3594697..3594975 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI69_RS16915 (SOI69_16915) gmk 3595048..3595677 (-) 630 WP_320539683.1 guanylate kinase -
  SOI69_RS16920 (SOI69_16920) ispH 3595800..3596750 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI69_RS16925 (SOI69_16925) fimU 3596920..3597393 (+) 474 WP_069141256.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI69_RS16930 (SOI69_16930) pilV 3597387..3597947 (+) 561 WP_081403682.1 type IV pilus modification protein PilV Machinery gene
  SOI69_RS16935 (SOI69_16935) pilW 3597947..3598948 (+) 1002 WP_320539684.1 PilW family protein Machinery gene
  SOI69_RS16940 (SOI69_16940) pilX 3598945..3599754 (+) 810 WP_320539685.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI69_RS16945 (SOI69_16945) pilY1 3599766..3603620 (+) 3855 WP_320539686.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI69_RS16950 (SOI69_16950) pilY2 3603631..3604113 (+) 483 WP_017400484.1 type IV pilin protein Machinery gene
  SOI69_RS16955 (SOI69_16955) pilE 3604110..3604535 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28565.37 Da        Isoelectric Point: 7.7238

>NTDB_id=908267 SOI69_RS16940 WP_320539685.1 3598945..3599754(+) (pilX) [Acinetobacter pittii strain HCG18]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTFAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908267 SOI69_RS16940 WP_320539685.1 3598945..3599754(+) (pilX) [Acinetobacter pittii strain HCG18]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGTCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCGGTTGTTGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCTGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACGCAACGGATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGTTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTCGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.338

100

0.903