Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SOI69_RS16925 Genome accession   NZ_CP139248
Coordinates   3596920..3597393 (+) Length   157 a.a.
NCBI ID   WP_069141256.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3591920..3602393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS16900 (SOI69_16900) spoT 3592382..3594487 (-) 2106 WP_320539682.1 RelA/SpoT family protein -
  SOI69_RS16905 (SOI69_16905) - 3594503..3594658 (-) 156 Protein_3293 hypothetical protein -
  SOI69_RS16910 (SOI69_16910) rpoZ 3594697..3594975 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI69_RS16915 (SOI69_16915) gmk 3595048..3595677 (-) 630 WP_320539683.1 guanylate kinase -
  SOI69_RS16920 (SOI69_16920) ispH 3595800..3596750 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI69_RS16925 (SOI69_16925) fimU 3596920..3597393 (+) 474 WP_069141256.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI69_RS16930 (SOI69_16930) pilV 3597387..3597947 (+) 561 WP_081403682.1 type IV pilus modification protein PilV Machinery gene
  SOI69_RS16935 (SOI69_16935) pilW 3597947..3598948 (+) 1002 WP_320539684.1 PilW family protein Machinery gene
  SOI69_RS16940 (SOI69_16940) pilX 3598945..3599754 (+) 810 WP_320539685.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16928.60 Da        Isoelectric Point: 7.7942

>NTDB_id=908264 SOI69_RS16925 WP_069141256.1 3596920..3597393(+) (fimU) [Acinetobacter pittii strain HCG18]
MRGIIPQDGFTLVELMVTIAVMAIISMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=908264 SOI69_RS16925 WP_069141256.1 3596920..3597393(+) (fimU) [Acinetobacter pittii strain HCG18]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCTCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGAGTGATAACCAATATCACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879