Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SOI69_RS16250 Genome accession   NZ_CP139248
Coordinates   3463832..3464419 (+) Length   195 a.a.
NCBI ID   WP_005804461.1    Uniprot ID   A0A009RDI8
Organism   Acinetobacter pittii strain HCG18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3458832..3469419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI69_RS16225 (SOI69_16225) - 3458902..3459708 (-) 807 WP_014207902.1 SDR family NAD(P)-dependent oxidoreductase -
  SOI69_RS16230 (SOI69_16230) - 3459812..3460183 (-) 372 WP_005066882.1 MerR family transcriptional regulator -
  SOI69_RS16235 (SOI69_16235) tenA 3460250..3460924 (-) 675 WP_320539634.1 thiaminase II -
  SOI69_RS16240 (SOI69_16240) - 3461187..3462269 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  SOI69_RS16245 (SOI69_16245) yajR 3462416..3463780 (+) 1365 WP_320539635.1 MFS transporter -
  SOI69_RS16250 (SOI69_16250) ssb 3463832..3464419 (+) 588 WP_005804461.1 single-stranded DNA-binding protein Machinery gene
  SOI69_RS16255 (SOI69_16255) - 3464575..3465801 (+) 1227 WP_320539636.1 site-specific integrase -
  SOI69_RS16260 (SOI69_16260) - 3465794..3467350 (+) 1557 WP_320539637.1 site-specific integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21195.98 Da        Isoelectric Point: 6.4822

>NTDB_id=908257 SOI69_RS16250 WP_005804461.1 3463832..3464419(+) (ssb) [Acinetobacter pittii strain HCG18]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGSQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=908257 SOI69_RS16250 WP_005804461.1 3463832..3464419(+) (ssb) [Acinetobacter pittii strain HCG18]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACACGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATTCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGTGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAACAATAACAACCAAGGTGGCGGCTACGGCCAAAACAGCGGTGGTTATGGTAGCCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCTCCGCAACAACCGGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RDI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.899

100

0.405
  ssb Neisseria gonorrhoeae MS11

38.384

100

0.39