Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABRA90_RS06730 Genome accession   NZ_CP158308
Coordinates   1415823..1416359 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain CM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1410823..1421359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRA90_RS06710 (ABRA90_06705) aphA 1411111..1411824 (+) 714 WP_001226928.1 acid phosphatase AphA -
  ABRA90_RS06715 (ABRA90_06710) yjbQ 1411935..1412351 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ABRA90_RS06720 (ABRA90_06715) yjbR 1412355..1412711 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ABRA90_RS06725 (ABRA90_06720) uvrA 1412746..1415568 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  ABRA90_RS06730 (ABRA90_06725) ssb 1415823..1416359 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ABRA90_RS06735 (ABRA90_06730) yjcB 1416458..1416739 (-) 282 WP_001295689.1 YjcB family protein -
  ABRA90_RS06740 (ABRA90_06735) pdeC 1417169..1418755 (+) 1587 WP_000019514.1 c-di-GMP phosphodiesterase PdeC -
  ABRA90_RS06745 (ABRA90_06740) soxS 1418758..1419081 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ABRA90_RS06750 (ABRA90_06745) soxR 1419167..1419631 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=908199 ABRA90_RS06730 WP_000168305.1 1415823..1416359(+) (ssb) [Escherichia coli strain CM2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=908199 ABRA90_RS06730 WP_000168305.1 1415823..1416359(+) (ssb) [Escherichia coli strain CM2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489