Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SJN48_RS01000 Genome accession   NZ_CP139212
Coordinates   220850..221437 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 215850..226437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS00975 (SJN48_00980) - 215927..216727 (-) 801 WP_130120554.1 SDR family oxidoreductase -
  SJN48_RS00980 (SJN48_00985) - 216831..217202 (-) 372 WP_005078608.1 MerR family transcriptional regulator -
  SJN48_RS00985 (SJN48_00990) tenA 217269..217943 (-) 675 WP_130120555.1 thiaminase II -
  SJN48_RS00990 (SJN48_00995) - 218205..219287 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  SJN48_RS00995 (SJN48_01000) yajR 219434..220798 (+) 1365 WP_407324007.1 MFS transporter -
  SJN48_RS01000 (SJN48_01005) ssb 220850..221437 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  SJN48_RS01005 (SJN48_01010) - 221478..221801 (-) 324 WP_032057180.1 AzlD domain-containing protein -
  SJN48_RS01010 (SJN48_01015) - 221798..222493 (-) 696 WP_130120556.1 AzlC family ABC transporter permease -
  SJN48_RS01015 (SJN48_01020) ydcN 222562..223110 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  SJN48_RS01020 (SJN48_01025) - 223416..224858 (+) 1443 WP_130120557.1 amino acid permease -
  SJN48_RS01025 (SJN48_01030) - 224924..226423 (-) 1500 WP_017399625.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=908091 SJN48_RS01000 WP_005066890.1 220850..221437(+) (ssb) [Acinetobacter pittii strain WWTP]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=908091 SJN48_RS01000 WP_005066890.1 220850..221437(+) (ssb) [Acinetobacter pittii strain WWTP]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCGCCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385