Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SON02_RS07475 Genome accession   NZ_CP139211
Coordinates   1701206..1701700 (+) Length   164 a.a.
NCBI ID   WP_135029485.1    Uniprot ID   -
Organism   Streptococcus sp. LysM4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1696206..1706700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SON02_RS07455 (SON02_07440) rpmB 1697665..1697853 (+) 189 WP_135029489.1 50S ribosomal protein L28 -
  SON02_RS07460 (SON02_07445) - 1698150..1698515 (+) 366 WP_075105451.1 Asp23/Gls24 family envelope stress response protein -
  SON02_RS07465 (SON02_07450) - 1698518..1700182 (+) 1665 WP_135029509.1 DAK2 domain-containing protein -
  SON02_RS07470 (SON02_07455) rpsF 1700904..1701194 (+) 291 WP_135029487.1 30S ribosomal protein S6 -
  SON02_RS07475 (SON02_07460) ssb 1701206..1701700 (+) 495 WP_135029485.1 single-stranded DNA-binding protein Machinery gene
  SON02_RS07480 (SON02_07465) rpsR 1701734..1701973 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  SON02_RS07485 (SON02_07470) - 1702662..1703360 (-) 699 WP_135029483.1 LiaF domain-containing protein -
  SON02_RS07490 (SON02_07475) - 1703437..1704087 (-) 651 WP_135029481.1 DUF1129 domain-containing protein -
  SON02_RS07495 (SON02_07480) - 1704108..1705052 (-) 945 WP_135029479.1 magnesium transporter CorA family protein -
  SON02_RS07500 (SON02_07485) - 1705619..1706332 (-) 714 WP_075099578.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18215.98 Da        Isoelectric Point: 4.7294

>NTDB_id=908068 SON02_RS07475 WP_135029485.1 1701206..1701700(+) (ssb) [Streptococcus sp. LysM4]
MINNVVLVGRMTRDAELRYTPANQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRTAREGQGGGYQAGNSFAGGNDYNSSYQAPAQSTPNFARDESPFGTTNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=908068 SON02_RS07475 WP_135029485.1 1701206..1701700(+) (ssb) [Streptococcus sp. LysM4]
ATGATAAATAATGTAGTACTAGTTGGTCGTATGACCCGCGATGCAGAACTTCGTTACACACCAGCGAACCAAGCTGTTGC
GACGTTTACACTTGCGGTTAATCGCAATTTTAAAAATCAAAACGGTGAGCGGGAAGCGGATTTTATCAATGTGGTGATTT
GGCGCCAGCAGGCTGAAAACTTGGCAAACTGGGCTAAAAAAGGTGCCTTGGTGGGAATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAGCAAGGTCAACGCGTTTATGTAACAGAGGTTGTTGCAGAAAATTTCCAACTATTGGAAAGCCGTAC
TGCACGTGAGGGCCAAGGTGGTGGTTACCAAGCTGGCAATTCCTTTGCTGGCGGCAATGATTACAACTCCTCCTATCAAG
CGCCTGCACAATCTACACCAAACTTTGCACGCGATGAAAGTCCATTTGGAACAACCAATCCAATGGATATTTCAGACGAT
GATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.412

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.634

0.366
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366