Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SLQ83_RS01425 Genome accession   NZ_CP139208
Coordinates   305471..306211 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain HNNY86G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 300471..311211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS01410 (SLQ83_01410) ponA 301059..303614 (-) 2556 WP_000736672.1 penicillin-binding protein PBP1a -
  SLQ83_RS01415 (SLQ83_01415) pilM 303775..304833 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  SLQ83_RS01420 (SLQ83_01420) pilN 304833..305474 (+) 642 WP_042051785.1 PilN domain-containing protein Machinery gene
  SLQ83_RS01425 (SLQ83_01425) pilO 305471..306211 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  SLQ83_RS01430 (SLQ83_01430) pilP 306222..306749 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  SLQ83_RS01435 (SLQ83_01435) pilQ 306812..308977 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  SLQ83_RS01440 (SLQ83_01440) aroK 308989..309558 (+) 570 WP_000643712.1 shikimate kinase AroK -
  SLQ83_RS01445 (SLQ83_01445) aroB 309587..310669 (+) 1083 WP_001194003.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=907943 SLQ83_RS01425 WP_000076101.1 305471..306211(+) (pilO) [Acinetobacter baumannii strain HNNY86G]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=907943 SLQ83_RS01425 WP_000076101.1 305471..306211(+) (pilO) [Acinetobacter baumannii strain HNNY86G]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683