Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SLQ83_RS01420 Genome accession   NZ_CP139208
Coordinates   304833..305474 (+) Length   213 a.a.
NCBI ID   WP_042051785.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HNNY86G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299833..310474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS01400 (SLQ83_01400) - 299882..300214 (+) 333 WP_000169602.1 hypothetical protein -
  SLQ83_RS01405 (SLQ83_01405) - 300217..301041 (+) 825 WP_001990541.1 putative RNA methyltransferase -
  SLQ83_RS01410 (SLQ83_01410) ponA 301059..303614 (-) 2556 WP_000736672.1 penicillin-binding protein PBP1a -
  SLQ83_RS01415 (SLQ83_01415) pilM 303775..304833 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  SLQ83_RS01420 (SLQ83_01420) pilN 304833..305474 (+) 642 WP_042051785.1 PilN domain-containing protein Machinery gene
  SLQ83_RS01425 (SLQ83_01425) pilO 305471..306211 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  SLQ83_RS01430 (SLQ83_01430) pilP 306222..306749 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  SLQ83_RS01435 (SLQ83_01435) pilQ 306812..308977 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  SLQ83_RS01440 (SLQ83_01440) aroK 308989..309558 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23989.33 Da        Isoelectric Point: 5.3968

>NTDB_id=907942 SLQ83_RS01420 WP_042051785.1 304833..305474(+) (pilN) [Acinetobacter baumannii strain HNNY86G]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSAGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=907942 SLQ83_RS01420 WP_042051785.1 304833..305474(+) (pilN) [Acinetobacter baumannii strain HNNY86G]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTGCTGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.77

98.122

0.704