Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SLQ83_RS01430 Genome accession   NZ_CP139208
Coordinates   306222..306749 (+) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain HNNY86G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301222..311749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS01415 (SLQ83_01415) pilM 303775..304833 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  SLQ83_RS01420 (SLQ83_01420) pilN 304833..305474 (+) 642 WP_042051785.1 PilN domain-containing protein Machinery gene
  SLQ83_RS01425 (SLQ83_01425) pilO 305471..306211 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  SLQ83_RS01430 (SLQ83_01430) pilP 306222..306749 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  SLQ83_RS01435 (SLQ83_01435) pilQ 306812..308977 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  SLQ83_RS01440 (SLQ83_01440) aroK 308989..309558 (+) 570 WP_000643712.1 shikimate kinase AroK -
  SLQ83_RS01445 (SLQ83_01445) aroB 309587..310669 (+) 1083 WP_001194003.1 3-dehydroquinate synthase -
  SLQ83_RS01450 (SLQ83_01450) - 310685..311560 (+) 876 WP_000218797.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=907944 SLQ83_RS01430 WP_000695065.1 306222..306749(+) (pilP) [Acinetobacter baumannii strain HNNY86G]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=907944 SLQ83_RS01430 WP_000695065.1 306222..306749(+) (pilP) [Acinetobacter baumannii strain HNNY86G]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTGGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714