Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SLP98_RS16235 Genome accession   NZ_CP139204
Coordinates   3458822..3459562 (-) Length   246 a.a.
NCBI ID   WP_114161202.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HNZZ130D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3453822..3464562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP98_RS16215 (SLP98_16215) aroB 3454364..3455446 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  SLP98_RS16220 (SLP98_16220) aroK 3455475..3456044 (-) 570 WP_000643712.1 shikimate kinase AroK -
  SLP98_RS16225 (SLP98_16225) pilQ 3456056..3458221 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  SLP98_RS16230 (SLP98_16230) pilP 3458284..3458811 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  SLP98_RS16235 (SLP98_16235) pilO 3458822..3459562 (-) 741 WP_114161202.1 type 4a pilus biogenesis protein PilO Machinery gene
  SLP98_RS16240 (SLP98_16240) pilN 3459559..3460200 (-) 642 WP_021510158.1 PilN domain-containing protein Machinery gene
  SLP98_RS16245 (SLP98_16245) pilM 3460200..3461258 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  SLP98_RS16250 (SLP98_16250) ponA 3461421..3463976 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27805.56 Da        Isoelectric Point: 4.8293

>NTDB_id=907936 SLP98_RS16235 WP_114161202.1 3458822..3459562(-) (pilO) [Acinetobacter baumannii strain HNZZ130D]
MSQDELQDLSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=907936 SLP98_RS16235 WP_114161202.1 3458822..3459562(-) (pilO) [Acinetobacter baumannii strain HNZZ130D]
ATGAGTCAAGACGAACTTCAAGACTTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACATGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683