Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SLP98_RS16230 Genome accession   NZ_CP139204
Coordinates   3458284..3458811 (-) Length   175 a.a.
NCBI ID   WP_000695069.1    Uniprot ID   A0A009IQZ1
Organism   Acinetobacter baumannii strain HNZZ130D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3453284..3463811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP98_RS16210 (SLP98_16210) - 3453473..3454348 (-) 876 WP_114161201.1 hypothetical protein -
  SLP98_RS16215 (SLP98_16215) aroB 3454364..3455446 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  SLP98_RS16220 (SLP98_16220) aroK 3455475..3456044 (-) 570 WP_000643712.1 shikimate kinase AroK -
  SLP98_RS16225 (SLP98_16225) pilQ 3456056..3458221 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  SLP98_RS16230 (SLP98_16230) pilP 3458284..3458811 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  SLP98_RS16235 (SLP98_16235) pilO 3458822..3459562 (-) 741 WP_114161202.1 type 4a pilus biogenesis protein PilO Machinery gene
  SLP98_RS16240 (SLP98_16240) pilN 3459559..3460200 (-) 642 WP_021510158.1 PilN domain-containing protein Machinery gene
  SLP98_RS16245 (SLP98_16245) pilM 3460200..3461258 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19449.66 Da        Isoelectric Point: 8.9898

>NTDB_id=907935 SLP98_RS16230 WP_000695069.1 3458284..3458811(-) (pilP) [Acinetobacter baumannii strain HNZZ130D]
MKIKQITLYVLACTVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=907935 SLP98_RS16230 WP_000695069.1 3458284..3458811(-) (pilP) [Acinetobacter baumannii strain HNZZ130D]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTACTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009IQZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714