Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SLP98_RS16240 Genome accession   NZ_CP139204
Coordinates   3459559..3460200 (-) Length   213 a.a.
NCBI ID   WP_021510158.1    Uniprot ID   A0AAV3K4P6
Organism   Acinetobacter baumannii strain HNZZ130D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3454559..3465200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLP98_RS16220 (SLP98_16220) aroK 3455475..3456044 (-) 570 WP_000643712.1 shikimate kinase AroK -
  SLP98_RS16225 (SLP98_16225) pilQ 3456056..3458221 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  SLP98_RS16230 (SLP98_16230) pilP 3458284..3458811 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  SLP98_RS16235 (SLP98_16235) pilO 3458822..3459562 (-) 741 WP_114161202.1 type 4a pilus biogenesis protein PilO Machinery gene
  SLP98_RS16240 (SLP98_16240) pilN 3459559..3460200 (-) 642 WP_021510158.1 PilN domain-containing protein Machinery gene
  SLP98_RS16245 (SLP98_16245) pilM 3460200..3461258 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  SLP98_RS16250 (SLP98_16250) ponA 3461421..3463976 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  SLP98_RS16255 (SLP98_16255) - 3463994..3464818 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  SLP98_RS16260 (SLP98_16260) - 3464821..3465153 (-) 333 WP_114161203.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24049.38 Da        Isoelectric Point: 5.3968

>NTDB_id=907937 SLP98_RS16240 WP_021510158.1 3459559..3460200(-) (pilN) [Acinetobacter baumannii strain HNZZ130D]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKTASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=907937 SLP98_RS16240 WP_021510158.1 3459559..3460200(-) (pilN) [Acinetobacter baumannii strain HNZZ130D]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGGTGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGACTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

72.381

98.592

0.714