Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SK095_RS12000 Genome accession   NZ_CP139195
Coordinates   2558371..2559720 (+) Length   449 a.a.
NCBI ID   WP_136490842.1    Uniprot ID   A0A8H8XRN1
Organism   Pseudomonas sp. AN-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2553371..2564720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK095_RS11980 (SK095_11980) - 2553664..2554671 (+) 1008 WP_136490839.1 outer membrane protein assembly factor BamD -
  SK095_RS11985 (SK095_11985) - 2554738..2556372 (-) 1635 WP_136490840.1 NAD+ synthase -
  SK095_RS11990 (SK095_11990) - 2556556..2556786 (+) 231 WP_136490841.1 PP0621 family protein -
  SK095_RS11995 (SK095_11995) pilS 2556773..2558368 (+) 1596 WP_136490854.1 sensor histidine kinase Regulator
  SK095_RS12000 (SK095_12000) pilR 2558371..2559720 (+) 1350 WP_136490842.1 sigma-54-dependent transcriptional regulator Regulator
  SK095_RS12005 (SK095_12005) gdhA 2560088..2561425 (+) 1338 WP_136490843.1 NADP-specific glutamate dehydrogenase -
  SK095_RS12010 (SK095_12010) - 2561603..2562460 (+) 858 WP_320546426.1 response regulator transcription factor -
  SK095_RS12015 (SK095_12015) - 2562457..2562657 (-) 201 WP_136490845.1 heavy-metal-associated domain-containing protein -
  SK095_RS12020 (SK095_12020) cueR 2562820..2563227 (+) 408 WP_136490846.1 Cu(I)-responsive transcriptional regulator -
  SK095_RS12025 (SK095_12025) - 2563345..2564670 (+) 1326 WP_320546427.1 lytic murein transglycosylase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49523.82 Da        Isoelectric Point: 5.2081

>NTDB_id=907807 SK095_RS12000 WP_136490842.1 2558371..2559720(+) (pilR) [Pseudomonas sp. AN-1]
MAQRALIVDDEPDIRELLEITLGRMKLDTRCARNVKEAREWLAREPFDLCLTDMRLPDGTGQELVQLIQQRYPQTPVAMI
TAYGSVDTAIDALKAGAFDFLTKPVDLGRLRELVATALRLRAPQSAAEAGGSVDSRLLGDSPPMRALRKQIAKLSRSQAP
VYISGESGSGKELVARLIHELGPRADKPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFKAADGGTLFLDEVAD
LPLPMQVKLLRAIQEKAVRAVGGQQELAVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELGVPPLRERREDIPLLAE
RALARLAADCGLEPARLSAEALEKLKSYRFPGNVRELENMLERAYTLCEDDLIQASDLRLGDAPAASASGEAAGQLTQID
DLEDFLENIERQAIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=907807 SK095_RS12000 WP_136490842.1 2558371..2559720(+) (pilR) [Pseudomonas sp. AN-1]
ATGGCGCAACGAGCCCTGATCGTCGACGACGAACCCGACATCCGCGAACTGCTGGAAATCACCCTCGGCCGCATGAAGCT
GGACACCCGCTGCGCGCGCAACGTCAAGGAAGCGCGCGAGTGGCTGGCGCGCGAGCCGTTCGACCTGTGCCTGACCGACA
TGCGCCTGCCCGACGGCACCGGCCAGGAACTGGTGCAGCTGATCCAGCAGCGCTACCCGCAGACGCCGGTGGCGATGATC
ACCGCCTACGGCAGCGTCGACACCGCGATCGACGCGCTCAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTCGACCT
CGGCCGCCTGCGCGAGCTGGTGGCCACCGCCCTGCGCCTGCGCGCCCCGCAGTCGGCGGCGGAAGCCGGAGGCTCGGTGG
ACAGCCGCCTGCTCGGCGACTCGCCGCCGATGCGCGCCCTGCGCAAGCAGATCGCCAAGCTGTCGCGCAGCCAGGCGCCG
GTGTACATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTGGTGGCGCGGCTGATCCACGAACTCGGCCCGCGCGCCGACAA
GCCGTTCGTGCCGGTCAACTGCGGCGCCATCCCCTCGGAGCTGATGGAGAGCGAGTTCTTCGGCCACCGCAAGGGCAGCT
TCACCGGCGCAGTGGAGGACAAGCCCGGCCTGTTCAAGGCCGCCGACGGCGGCACCCTGTTCCTCGACGAGGTGGCCGAC
CTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGCT
GGCGGTGGACGTGCGCATCCTCAGCGCCACCCACAAGGACCTGGCCGCCGAGGTCGCCGCCGGGCGCTTCCGCCAGGATC
TCTACTACCGCCTCAACGTCATCGAACTGGGCGTGCCGCCGCTGCGCGAGCGCCGCGAGGACATCCCGCTGCTCGCCGAG
CGCGCCCTCGCCCGCCTGGCCGCCGACTGCGGCCTGGAACCGGCGCGCCTCTCCGCCGAGGCGCTGGAGAAGCTCAAGAG
CTACCGCTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAGCGCGCCTACACCCTCTGCGAGGACGACCTGATCC
AGGCCAGCGACCTGCGCCTGGGCGACGCCCCCGCCGCCAGCGCCAGCGGCGAAGCCGCCGGCCAGCTGACGCAGATCGAC
GACCTCGAGGACTTCCTCGAGAACATCGAGCGCCAGGCGATCATGCAGGCGCTCGAGGAAACCCGCTGGAACCGCACCGC
CGCCGCCCAGCGCCTCGGCCTGTCGTTCCGCTCGATGCGCTACCGGCTTAAGAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-446)

Response regulator receiver domain (Response_reg)

(6-114)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.011

99.555

0.846
  pilR Acinetobacter baumannii strain A118

49.673

100

0.508
  luxO Vibrio cholerae strain A1552

39.15

99.555

0.39