Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SK095_RS11995 Genome accession   NZ_CP139195
Coordinates   2556773..2558368 (+) Length   531 a.a.
NCBI ID   WP_136490854.1    Uniprot ID   -
Organism   Pseudomonas sp. AN-1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2551773..2563368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK095_RS11970 (SK095_11970) pgeF 2551818..2552561 (-) 744 WP_136490837.1 peptidoglycan editing factor PgeF -
  SK095_RS11975 (SK095_11975) rluD 2552558..2553520 (-) 963 WP_136490838.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SK095_RS11980 (SK095_11980) - 2553664..2554671 (+) 1008 WP_136490839.1 outer membrane protein assembly factor BamD -
  SK095_RS11985 (SK095_11985) - 2554738..2556372 (-) 1635 WP_136490840.1 NAD+ synthase -
  SK095_RS11990 (SK095_11990) - 2556556..2556786 (+) 231 WP_136490841.1 PP0621 family protein -
  SK095_RS11995 (SK095_11995) pilS 2556773..2558368 (+) 1596 WP_136490854.1 sensor histidine kinase Regulator
  SK095_RS12000 (SK095_12000) pilR 2558371..2559720 (+) 1350 WP_136490842.1 sigma-54-dependent transcriptional regulator Regulator
  SK095_RS12005 (SK095_12005) gdhA 2560088..2561425 (+) 1338 WP_136490843.1 NADP-specific glutamate dehydrogenase -
  SK095_RS12010 (SK095_12010) - 2561603..2562460 (+) 858 WP_320546426.1 response regulator transcription factor -
  SK095_RS12015 (SK095_12015) - 2562457..2562657 (-) 201 WP_136490845.1 heavy-metal-associated domain-containing protein -
  SK095_RS12020 (SK095_12020) cueR 2562820..2563227 (+) 408 WP_136490846.1 Cu(I)-responsive transcriptional regulator -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58714.83 Da        Isoelectric Point: 8.3901

>NTDB_id=907806 SK095_RS11995 WP_136490854.1 2556773..2558368(+) (pilS) [Pseudomonas sp. AN-1]
MNSAELWAPSAEQGQRILRLYHLYRLSVGLALVLLISSDMHRELLEMADPQLFRFGSWAYLAINVVLGVLLQQTCRSLAL
FALALFDVTLLSTLFYAGGGLSSGLAPLLVISVAIANSMLRGRLGLVIAALASSGLIYLTFYLSLSKSAAASQYVQAGAL
GALCFAAALIIQALGRRLQQSESLARRHAADVADLQALNALILQRMRTGILVLDPQRRVLLANPSSLTLLGQRQLVTQSL
DEHCPALLECLHQWQENPALRPQTLQGFAEGPALQPSFVPLQRKGERNLLIFLEDVSQIAQQAQQLKLAALGRLSAGIAH
EIRNPLGAISHAAQLLQEAEDLGPADRRLTQIILDHSRRMNLVIENVLQLSRRREAEPQLLDLRYWLHRFAGELRESRRG
DAVLHLECATGSIQTRMDPQQLTQILTNLVQNGLRHSARKHDKGQVWLRLFRDEQTQLPVLEVVDDGDGIPPEQRGNLFE
PFFSTESKGTGLGLYISRELCESNRARLDYVPREGSGACFRITFAHPKTAS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=907806 SK095_RS11995 WP_136490854.1 2556773..2558368(+) (pilS) [Pseudomonas sp. AN-1]
CTGAACAGCGCTGAACTCTGGGCGCCGAGCGCCGAGCAGGGCCAGCGCATCCTGCGTCTGTACCACCTGTACCGGCTGAG
CGTCGGCCTGGCCCTGGTGCTGCTGATCTCCAGCGACATGCACCGCGAGCTGCTGGAGATGGCCGATCCCCAGCTGTTCC
GCTTCGGCAGTTGGGCCTACCTGGCGATCAACGTGGTGCTCGGCGTGCTGCTGCAGCAGACCTGCCGCTCGCTGGCGCTG
TTCGCCCTGGCGCTGTTCGACGTGACCCTGCTCAGCACCCTGTTCTACGCCGGCGGCGGCCTGTCCAGCGGCCTGGCGCC
GCTGCTGGTGATCTCGGTGGCGATCGCCAACAGCATGCTGCGCGGGCGCCTGGGCCTGGTGATCGCCGCGCTGGCCAGCA
GCGGGCTGATCTACCTGACCTTCTACCTCAGCCTCAGCAAGTCGGCCGCCGCCAGCCAGTACGTGCAGGCCGGCGCCCTC
GGCGCGCTGTGCTTCGCCGCCGCGCTGATCATCCAGGCCCTCGGCCGCCGCCTGCAGCAGAGCGAGAGCCTGGCCCGCCG
CCACGCCGCCGACGTCGCCGACCTGCAGGCGCTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTCCTCG
ACCCGCAGCGCCGCGTGCTGCTGGCCAACCCCAGCAGCCTGACCCTGCTCGGCCAGCGCCAGCTGGTGACCCAGTCGCTC
GACGAACACTGCCCGGCCCTGCTCGAGTGCCTGCACCAGTGGCAGGAAAACCCCGCGCTGCGTCCGCAGACCCTGCAGGG
CTTCGCCGAAGGCCCGGCGCTGCAGCCGAGCTTCGTCCCGCTGCAGCGCAAGGGCGAGCGCAACCTGCTGATCTTCCTCG
AGGACGTCTCGCAGATCGCCCAGCAGGCGCAGCAGCTCAAGCTGGCCGCCCTCGGCCGCCTCAGCGCCGGCATCGCCCAC
GAGATCCGCAACCCGCTGGGCGCCATCAGCCACGCCGCCCAGCTGCTGCAGGAAGCCGAGGATCTCGGCCCGGCGGACCG
CCGCCTGACCCAGATCATCCTCGACCACTCGCGGCGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTGTCGCGCCGCC
GCGAGGCCGAGCCGCAGCTGCTCGACCTGCGCTACTGGCTGCACCGCTTCGCCGGCGAGCTGCGCGAAAGCCGGCGCGGC
GACGCGGTGCTGCACCTGGAGTGCGCGACCGGCTCGATCCAGACGCGCATGGACCCGCAGCAGCTGACCCAGATCCTCAC
CAACCTGGTGCAGAACGGCCTGCGCCACAGCGCGCGCAAGCACGACAAGGGGCAGGTCTGGCTGCGCCTGTTCCGCGACG
AGCAGACCCAGCTGCCGGTGCTCGAGGTGGTCGACGACGGCGACGGCATCCCGCCGGAGCAGCGCGGCAACCTGTTCGAA
CCCTTCTTCAGCACCGAGAGCAAGGGCACCGGCCTCGGCCTGTACATCTCCCGCGAGCTGTGCGAGAGCAACCGCGCCCG
CCTCGACTACGTGCCCCGCGAAGGCAGCGGCGCCTGCTTCCGCATCACCTTTGCCCATCCGAAGACCGCGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-525)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

63.793

98.305

0.627