Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SK090_RS02250 Genome accession   NZ_CP139189
Coordinates   469242..469829 (-) Length   195 a.a.
NCBI ID   WP_005340181.1    Uniprot ID   A0A165S798
Organism   Aeromonas veronii strain FS12001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 464242..474829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK090_RS02225 cspA 465548..465760 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  SK090_RS02230 yjbD 466356..466640 (-) 285 WP_320545711.1 DUF3811 domain-containing protein -
  SK090_RS02235 - 466787..467689 (-) 903 WP_043822581.1 cation diffusion facilitator family transporter -
  SK090_RS02240 - 468151..468276 (+) 126 WP_019445191.1 hypothetical protein -
  SK090_RS02245 - 468349..469092 (-) 744 WP_026034915.1 ABC transporter substrate-binding protein -
  SK090_RS02250 ssb 469242..469829 (-) 588 WP_005340181.1 single-stranded DNA-binding protein Machinery gene
  SK090_RS02255 - 470256..470903 (+) 648 WP_042080923.1 LuxR C-terminal-related transcriptional regulator -
  SK090_RS02260 - 470903..471346 (+) 444 WP_005355005.1 curli production assembly/transport protein CsgE -
  SK090_RS02265 - 471358..471759 (+) 402 WP_005355004.1 curli assembly protein CsgF -
  SK090_RS02270 - 471767..472606 (+) 840 WP_005355003.1 CsgG/HfaB family protein -
  SK090_RS02275 - 472793..473314 (+) 522 WP_320545712.1 curlin -
  SK090_RS02280 - 473349..474800 (+) 1452 WP_043822571.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21583.11 Da        Isoelectric Point: 5.9301

>NTDB_id=907677 SK090_RS02250 WP_005340181.1 469242..469829(-) (ssb) [Aeromonas veronii strain FS12001]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=907677 SK090_RS02250 WP_005340181.1 469242..469829(-) (ssb) [Aeromonas veronii strain FS12001]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCACCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165S798

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456