Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   SIS06_RS13505 Genome accession   NZ_CP139188
Coordinates   2556611..2556946 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain H17-16     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2551611..2561946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIS06_RS13485 (SIS06_13485) gcvT 2552202..2553290 (-) 1089 WP_283933554.1 glycine cleavage system aminomethyltransferase GcvT -
  SIS06_RS13490 (SIS06_13490) hepAA 2553732..2555405 (+) 1674 WP_169037820.1 DEAD/DEAH box helicase -
  SIS06_RS13495 (SIS06_13495) yqhG 2555426..2556220 (+) 795 WP_032726154.1 YqhG family protein -
  SIS06_RS13500 (SIS06_13500) sinI 2556404..2556577 (+) 174 WP_014477323.1 anti-repressor SinI Regulator
  SIS06_RS13505 (SIS06_13505) sinR 2556611..2556946 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  SIS06_RS13510 (SIS06_13510) tasA 2557038..2557823 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  SIS06_RS13515 (SIS06_13515) sipW 2557888..2558460 (-) 573 WP_003230181.1 signal peptidase I SipW -
  SIS06_RS13520 (SIS06_13520) tapA 2558444..2559205 (-) 762 WP_283933555.1 amyloid fiber anchoring/assembly protein TapA -
  SIS06_RS13525 (SIS06_13525) yqzG 2559477..2559803 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  SIS06_RS13530 (SIS06_13530) spoIITA 2559845..2560024 (-) 180 WP_014480252.1 YqzE family protein -
  SIS06_RS13535 (SIS06_13535) comGG 2560095..2560469 (-) 375 WP_283933556.1 ComG operon protein ComGG Machinery gene
  SIS06_RS13540 (SIS06_13540) comGF 2560470..2560853 (-) 384 WP_283933557.1 ComG operon protein ComGF Machinery gene
  SIS06_RS13545 (SIS06_13545) comGE 2560879..2561226 (-) 348 WP_283933558.1 ComG operon protein 5 Machinery gene
  SIS06_RS13550 (SIS06_13550) comGD 2561210..2561641 (-) 432 WP_283933559.1 comG operon protein ComGD Machinery gene
  SIS06_RS13555 (SIS06_13555) comGC 2561631..2561927 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=907633 SIS06_RS13505 WP_003226345.1 2556611..2556946(+) (sinR) [Bacillus subtilis strain H17-16]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=907633 SIS06_RS13505 WP_003226345.1 2556611..2556946(+) (sinR) [Bacillus subtilis strain H17-16]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1