Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ABMY55_RS12695 Genome accession   NZ_CP158143
Coordinates   2633490..2634227 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain FDN-11     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2628490..2639227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABMY55_RS12665 (ABMY55_12665) yfiL 2628648..2629013 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  ABMY55_RS12670 (ABMY55_12670) aroF 2629223..2630293 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ABMY55_RS12675 (ABMY55_12675) tyrA 2630304..2631425 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ABMY55_RS12680 (ABMY55_12680) pheA 2631468..2632628 (-) 1161 WP_227898963.1 bifunctional chorismate mutase/prephenate dehydratase -
  ABMY55_RS12685 (ABMY55_12685) pheL 2632727..2632774 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ABMY55_RS12690 (ABMY55_12690) raiA 2632878..2633219 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ABMY55_RS12695 (ABMY55_12695) comL 2633490..2634227 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ABMY55_RS12700 (ABMY55_12700) rluD 2634362..2635342 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABMY55_RS12705 (ABMY55_12705) yfiH 2635339..2636070 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  ABMY55_RS12710 (ABMY55_12710) clpC 2636200..2638773 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=907634 ABMY55_RS12695 WP_000197686.1 2633490..2634227(-) (comL) [Escherichia coli strain FDN-11]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=907634 ABMY55_RS12695 WP_000197686.1 2633490..2634227(-) (comL) [Escherichia coli strain FDN-11]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376