Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R0L47_RS14745 Genome accession   NZ_CP139173
Coordinates   3120555..3121097 (+) Length   180 a.a.
NCBI ID   WP_014701314.1    Uniprot ID   A0AAE9SYY7
Organism   Pectobacterium polonicum strain LMG 31077     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3115555..3126097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0L47_RS14730 (R0L47_14665) - 3115969..3116472 (+) 504 WP_137739969.1 M48 family metallopeptidase -
  R0L47_RS14735 (R0L47_14670) - 3117035..3117454 (-) 420 WP_137739970.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  R0L47_RS14740 (R0L47_14675) uvrA 3117471..3120305 (-) 2835 WP_137739971.1 excinuclease ABC subunit UvrA -
  R0L47_RS14745 (R0L47_14680) ssb 3120555..3121097 (+) 543 WP_014701314.1 single-stranded DNA-binding protein SSB1 Machinery gene
  R0L47_RS14750 (R0L47_14685) - 3121331..3123172 (+) 1842 WP_137739972.1 amidohydrolase -
  R0L47_RS14755 (R0L47_14690) - 3123308..3123400 (+) 93 Protein_2893 GNAT family N-acetyltransferase -
  R0L47_RS14760 (R0L47_14695) - 3123655..3124245 (+) 591 WP_137739973.1 hypothetical protein -
  R0L47_RS14765 (R0L47_14700) - 3124253..3125290 (-) 1038 WP_039470141.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19099.08 Da        Isoelectric Point: 5.2456

>NTDB_id=907531 R0L47_RS14745 WP_014701314.1 3120555..3121097(+) (ssb) [Pectobacterium polonicum strain LMG 31077]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=907531 R0L47_RS14745 WP_014701314.1 3120555..3121097(+) (ssb) [Pectobacterium polonicum strain LMG 31077]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTCGGCAAACTGGCAGAAGTGGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAACGTTACACCACAGAAGTGGTTGTTAACGTCGG
CGGCACCATGCAGATGCTAGGTGGACGTCAGGGTGGCGGCGCACCAGCAGGTGGTAACGCTGGTGGCGGCCAGCAGCAAG
GCGGTTGGGGTCAACCTCAGCAGCCGCAGGGCGGCAACCAATTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCGGCACAG
AATAGCGCACCCGCGCAAAGCAACGAACCACCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461