Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SIM97_RS20390 Genome accession   NZ_CP139172
Coordinates   4550967..4551512 (+) Length   181 a.a.
NCBI ID   WP_005975000.1    Uniprot ID   -
Organism   Pectobacterium zantedeschiae strain CFBP 1357     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4545967..4556512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIM97_RS20375 (SIM97_20360) cas6f 4545975..4546529 (+) 555 WP_129706598.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -
  SIM97_RS20380 (SIM97_20365) - 4547446..4547864 (-) 419 Protein_3978 secondary thiamine-phosphate synthase enzyme YjbQ -
  SIM97_RS20385 (SIM97_20370) uvrA 4547881..4550716 (-) 2836 Protein_3979 excinuclease ABC subunit UvrA -
  SIM97_RS20390 (SIM97_20375) ssb 4550967..4551512 (+) 546 WP_005975000.1 single-stranded DNA-binding protein SSB1 Machinery gene
  SIM97_RS20395 (SIM97_20380) - 4551687..4551800 (-) 114 Protein_3981 IS630 family transposase -
  SIM97_RS20400 (SIM97_20385) - 4552070..4552351 (+) 282 WP_129706603.1 hypothetical protein -
  SIM97_RS20405 (SIM97_20390) - 4552546..4554990 (+) 2445 WP_395303053.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19156.13 Da        Isoelectric Point: 5.2456

>NTDB_id=907514 SIM97_RS20390 WP_005975000.1 4550967..4551512(+) (ssb) [Pectobacterium zantedeschiae strain CFBP 1357]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPA
QNSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=907514 SIM97_RS20390 WP_005975000.1 4550967..4551512(+) (ssb) [Pectobacterium zantedeschiae strain CFBP 1357]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCTGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTGGTTCTGTTCGGCAAGCTGGCAGAAGTCGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGTTACACCACTGAAGTGGTCGTTAACGTCGG
CGGCACCATGCAAATGCTAGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTGGCAATGCAGGTGGCGGCCAACAAC
AAGGCGGTTGGGGTCAACCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAAGCGCAGCAGCGCCCAGCT
CAGAATAGCGCTCCGGCACAAAGCAACGAGCCGCCAATGGATTTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.751
  ssb Glaesserella parasuis strain SC1401

56.989

100

0.586
  ssb Neisseria gonorrhoeae MS11

46.111

99.448

0.459
  ssb Neisseria meningitidis MC58

46.111

99.448

0.459