Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SKB18_RS07050 Genome accession   NZ_CP139163
Coordinates   1443222..1443956 (+) Length   244 a.a.
NCBI ID   WP_012027751.1    Uniprot ID   A0A0Z9J9V6
Organism   Streptococcus suis strain cnzyss2-311     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1438222..1448956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS07020 - 1438418..1440082 (+) 1665 WP_012028485.1 DAK2 domain-containing protein -
  SKB18_RS07025 tsaE 1440183..1440623 (+) 441 WP_012775330.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SKB18_RS07030 - 1440616..1441143 (+) 528 WP_012027755.1 GNAT family N-acetyltransferase -
  SKB18_RS07035 - 1441140..1442333 (+) 1194 WP_012027754.1 LCP family protein -
  SKB18_RS07040 - 1442442..1442744 (-) 303 WP_012027753.1 methyl-accepting chemotaxis protein -
  SKB18_RS07045 - 1442746..1443159 (-) 414 WP_012027752.1 HIT family protein -
  SKB18_RS07050 pptA 1443222..1443956 (+) 735 WP_012027751.1 ABC transporter ATP-binding protein Regulator
  SKB18_RS07055 - 1443953..1444993 (+) 1041 WP_012027749.1 ABC transporter permease -
  SKB18_RS07060 ccrZ 1445043..1445837 (+) 795 WP_002942360.1 cell cycle regulator CcrZ -
  SKB18_RS07065 trmB 1445834..1446472 (+) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SKB18_RS07070 rimP 1447043..1447513 (+) 471 WP_002942369.1 ribosome maturation factor RimP -
  SKB18_RS07075 nusA 1447587..1448729 (+) 1143 WP_004194726.1 transcription termination factor NusA -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26788.09 Da        Isoelectric Point: 4.3999

>NTDB_id=907467 SKB18_RS07050 WP_012027751.1 1443222..1443956(+) (pptA) [Streptococcus suis strain cnzyss2-311]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIVIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLGEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=907467 SKB18_RS07050 WP_012027751.1 1443222..1443956(+) (pptA) [Streptococcus suis strain cnzyss2-311]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCCT
ATCAAGGACAGATTGTAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAAATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGGGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z9J9V6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717