Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   SKB18_RS07590 Genome accession   NZ_CP139163
Coordinates   1559769..1560458 (+) Length   229 a.a.
NCBI ID   WP_012027645.1    Uniprot ID   -
Organism   Streptococcus suis strain cnzyss2-311     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554769..1565458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS07565 - 1555098..1556441 (+) 1344 WP_012027650.1 DEAD/DEAH box helicase -
  SKB18_RS07570 - 1556459..1556683 (+) 225 WP_002936682.1 DUF4059 family protein -
  SKB18_RS07575 trxB 1556697..1557614 (+) 918 WP_002942687.1 thioredoxin-disulfide reductase -
  SKB18_RS07580 - 1557624..1558163 (+) 540 WP_012027649.1 DUF177 domain-containing protein -
  SKB18_RS07585 gndA 1558260..1559687 (+) 1428 WP_012028448.1 NADP-dependent phosphogluconate dehydrogenase -
  SKB18_RS07590 covR 1559769..1560458 (+) 690 WP_012027645.1 DNA-binding response regulator Regulator
  SKB18_RS07595 - 1560548..1561678 (+) 1131 WP_014636703.1 AI-2E family transporter -
  SKB18_RS07600 nrdR 1561750..1562241 (+) 492 WP_002938341.1 transcriptional regulator NrdR -
  SKB18_RS07605 - 1562228..1563379 (+) 1152 WP_012027643.1 replication initiation/membrane attachment protein -
  SKB18_RS07610 dnaI 1563379..1564278 (+) 900 WP_012027642.1 primosomal protein DnaI -
  SKB18_RS07615 - 1564275..1564987 (+) 713 Protein_1455 NADPH-dependent oxidoreductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26255.14 Da        Isoelectric Point: 5.3968

>NTDB_id=907469 SKB18_RS07590 WP_012027645.1 1559769..1560458(+) (covR) [Streptococcus suis strain cnzyss2-311]
MAKKILIAGKERNLSHFVSMELQKKDYLVDYASTGKEAMSLAHETDFDLILMSFQLSDMSSKELATELLAIKPATVMIVV
VEPTEVSQYGEEVLSYAVSYVVKPFVISDLVEQISAIFRGRDFIDNNCKQVHMHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDLPHQDSYIKTVRGVGYAMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=907469 SKB18_RS07590 WP_012027645.1 1559769..1560458(+) (covR) [Streptococcus suis strain cnzyss2-311]
ATGGCTAAGAAAATTTTGATTGCTGGTAAAGAACGCAATCTCTCGCATTTTGTTTCCATGGAATTGCAAAAAAAAGACTA
TCTTGTTGATTATGCATCGACAGGGAAAGAGGCTATGTCCTTGGCACATGAAACGGATTTTGACTTGATTCTGATGAGTT
TTCAGCTTTCAGACATGTCCAGCAAGGAATTGGCTACAGAACTGTTAGCGATAAAACCAGCCACGGTCATGATTGTGGTA
GTTGAGCCGACAGAAGTTAGTCAATATGGGGAAGAAGTCCTCTCTTATGCTGTTTCCTACGTGGTGAAGCCCTTTGTCAT
TAGTGATTTAGTGGAGCAAATCTCTGCGATTTTTCGTGGTCGTGACTTTATTGACAATAACTGTAAACAGGTTCACATGC
ATGCGGCCTATCGTGATTTGAAGGTTGATTTTCAAAATCGAACAGTGACTCGAGGTGATGAATTGATTAATTTGACCCGC
CGAGAGTATGATCTGCTGGCAACCTTAATGAATAGCCCAGAGCCTGTTAGTCGAGAACAACTTCTTGAGCGTGTTTGGAA
ATATGAAGCGGCTTCTGAGACCAATGTCGTCGATGTATATATTCGCTATCTACGTGGTAAACTGGATTTGCCACATCAAG
ATTCATATATAAAAACAGTTCGTGGTGTCGGATATGCCATGCGCGATTGA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.619

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432