Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SH598_RS19720 Genome accession   NZ_CP139086
Coordinates   4029059..4029577 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain YN-2A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4024059..4034577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH598_RS19690 (SH598_19690) - 4025255..4025635 (-) 381 WP_039253120.1 VOC family protein -
  SH598_RS19695 (SH598_19695) - 4025692..4026630 (-) 939 WP_040238661.1 LacI family DNA-binding transcriptional regulator -
  SH598_RS19700 (SH598_19700) xth 4026693..4027451 (-) 759 WP_039253116.1 exodeoxyribonuclease III -
  SH598_RS19705 (SH598_19705) - 4027448..4028005 (-) 558 WP_040238659.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  SH598_RS19710 (SH598_19710) - 4028017..4028583 (-) 567 WP_040238657.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  SH598_RS19715 (SH598_19715) rpsR 4028776..4029015 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  SH598_RS19720 (SH598_19720) ssbA 4029059..4029577 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  SH598_RS19725 (SH598_19725) rpsF 4029617..4029904 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  SH598_RS19730 (SH598_19730) ychF 4030016..4031116 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  SH598_RS19735 (SH598_19735) - 4031243..4033246 (-) 2004 WP_039253106.1 molybdopterin-dependent oxidoreductase -
  SH598_RS19740 (SH598_19740) - 4033293..4033499 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=907202 SH598_RS19720 WP_004392979.1 4029059..4029577(-) (ssbA) [Bacillus velezensis strain YN-2A]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=907202 SH598_RS19720 WP_004392979.1 4029059..4029577(-) (ssbA) [Bacillus velezensis strain YN-2A]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378