Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IDSSA_RS11125 | Genome accession | NZ_AP025249 |
| Coordinates | 2188654..2189124 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain IDSA1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2157654..2207081 | 2188654..2189124 | within | 0 |
Gene organization within MGE regions
Location: 2157654..2207081
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IDSSA_RS10900 (IDSSA_0121100) | scn | 2157654..2158004 (-) | 351 | WP_000702262.1 | complement inhibitor SCIN-A | - |
| IDSSA_RS10905 (IDSSA_0121110) | - | 2158514..2158852 (-) | 339 | Protein_2114 | SH3 domain-containing protein | - |
| IDSSA_RS10910 (IDSSA_0121120) | sak | 2159501..2159992 (-) | 492 | WP_000920041.1 | staphylokinase | - |
| IDSSA_RS10915 (IDSSA_0121130) | - | 2160183..2160938 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| IDSSA_RS10920 (IDSSA_0121140) | - | 2160950..2161204 (-) | 255 | WP_000611512.1 | phage holin | - |
| IDSSA_RS10925 | - | 2161256..2161363 (+) | 108 | Protein_2118 | hypothetical protein | - |
| IDSSA_RS10930 (IDSSA_0121150) | pepG1 | 2161416..2161550 (-) | 135 | WP_000226106.1 | type I toxin-antitoxin system toxin PepG1 | - |
| IDSSA_RS10935 (IDSSA_0121160) | sea | 2161701..2162474 (-) | 774 | WP_000750412.1 | staphylococcal enterotoxin type A | - |
| IDSSA_RS10940 (IDSSA_0121170) | - | 2162847..2163221 (-) | 375 | WP_000340977.1 | hypothetical protein | - |
| IDSSA_RS10945 (IDSSA_0121180) | - | 2163277..2163564 (-) | 288 | WP_001262621.1 | hypothetical protein | - |
| IDSSA_RS10950 (IDSSA_0121190) | - | 2163610..2163762 (-) | 153 | WP_001000059.1 | hypothetical protein | - |
| IDSSA_RS10955 (IDSSA_0121200) | - | 2163755..2167537 (-) | 3783 | WP_407876420.1 | phage tail spike protein | - |
| IDSSA_RS10960 (IDSSA_0121210) | - | 2167553..2169037 (-) | 1485 | WP_000567408.1 | phage distal tail protein | - |
| IDSSA_RS10965 (IDSSA_0121220) | - | 2169034..2173563 (-) | 4530 | WP_407876421.1 | phage tail tape measure protein | - |
| IDSSA_RS10970 (IDSSA_0121230) | gpGT | 2173620..2173757 (-) | 138 | WP_001549167.1 | phage tail assembly chaperone GT | - |
| IDSSA_RS10975 (IDSSA_0121240) | gpG | 2173808..2174158 (-) | 351 | WP_001096355.1 | phage tail assembly chaperone G | - |
| IDSSA_RS10980 | - | 2174208..2174432 (-) | 225 | WP_072050172.1 | Ig-like domain-containing protein | - |
| IDSSA_RS10985 (IDSSA_0121260) | - | 2174474..2175118 (-) | 645 | WP_000268741.1 | major tail protein | - |
| IDSSA_RS10990 (IDSSA_0121270) | - | 2175119..2175526 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| IDSSA_RS10995 (IDSSA_0121280) | - | 2175523..2175927 (-) | 405 | WP_000114225.1 | HK97 gp10 family phage protein | - |
| IDSSA_RS11000 (IDSSA_0121290) | - | 2175924..2176286 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| IDSSA_RS11005 (IDSSA_0121300) | - | 2176270..2176554 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| IDSSA_RS11010 (IDSSA_0121310) | - | 2176544..2176828 (-) | 285 | WP_000238236.1 | hypothetical protein | - |
| IDSSA_RS11015 (IDSSA_0121320) | - | 2176848..2177993 (-) | 1146 | WP_000154555.1 | phage major capsid protein | - |
| IDSSA_RS11020 (IDSSA_0121330) | - | 2178017..2178754 (-) | 738 | WP_000861914.1 | head maturation protease, ClpP-related | - |
| IDSSA_RS11025 (IDSSA_0121340) | - | 2178738..2179901 (-) | 1164 | WP_000025268.1 | phage portal protein | - |
| IDSSA_RS11030 (IDSSA_0121350) | - | 2179917..2181578 (-) | 1662 | WP_000625087.1 | terminase large subunit | - |
| IDSSA_RS11035 (IDSSA_0121360) | - | 2181575..2181919 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| IDSSA_RS11040 (IDSSA_0121370) | - | 2182050..2182349 (-) | 300 | WP_000988336.1 | HNH endonuclease | - |
| IDSSA_RS11045 (IDSSA_0121380) | - | 2182581..2182997 (-) | 417 | WP_000590126.1 | hypothetical protein | - |
| IDSSA_RS11050 (IDSSA_0121390) | - | 2183025..2183225 (-) | 201 | WP_000265039.1 | DUF1514 family protein | - |
| IDSSA_RS11055 (IDSSA_0121400) | rinB | 2183225..2183374 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IDSSA_RS11060 (IDSSA_0121410) | - | 2183371..2183757 (-) | 387 | WP_000592207.1 | hypothetical protein | - |
| IDSSA_RS11065 (IDSSA_0121420) | - | 2183754..2183960 (-) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| IDSSA_RS11070 (IDSSA_0121430) | - | 2183997..2184533 (-) | 537 | WP_001066444.1 | dUTPase | - |
| IDSSA_RS11075 (IDSSA_0121440) | - | 2184526..2184936 (-) | 411 | WP_000197967.1 | hypothetical protein | - |
| IDSSA_RS11080 | - | 2185293..2185418 (-) | 126 | Protein_2149 | DUF1024 family protein | - |
| IDSSA_RS11085 (IDSSA_0121460) | - | 2185411..2185695 (-) | 285 | WP_001105604.1 | hypothetical protein | - |
| IDSSA_RS11090 (IDSSA_0121470) | - | 2185692..2186141 (-) | 450 | WP_000982711.1 | YopX family protein | - |
| IDSSA_RS11095 (IDSSA_0121480) | - | 2186206..2186448 (-) | 243 | WP_000221871.1 | SAV1978 family virulence-associated passenger protein | - |
| IDSSA_RS11100 (IDSSA_0121490) | - | 2186451..2186708 (-) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| IDSSA_RS11105 (IDSSA_0121500) | - | 2186708..2187080 (-) | 373 | Protein_2154 | SA1788 family PVL leukocidin-associated protein | - |
| IDSSA_RS11110 (IDSSA_0121510) | - | 2187093..2187497 (-) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IDSSA_RS11115 (IDSSA_0121520) | - | 2187506..2187724 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| IDSSA_RS11120 (IDSSA_0121530) | - | 2187731..2188624 (-) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| IDSSA_RS11125 (IDSSA_0121540) | ssbA | 2188654..2189124 (-) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| IDSSA_RS11130 (IDSSA_0121550) | - | 2189125..2189742 (-) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| IDSSA_RS11135 (IDSSA_0121560) | - | 2189823..2190743 (-) | 921 | WP_000180598.1 | recombinase RecT | - |
| IDSSA_RS11140 (IDSSA_0121570) | - | 2190745..2192688 (-) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| IDSSA_RS11145 (IDSSA_0121580) | - | 2192697..2192960 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| IDSSA_RS11150 (IDSSA_0121590) | - | 2192969..2193229 (-) | 261 | WP_001814567.1 | DUF1108 family protein | - |
| IDSSA_RS11155 (IDSSA_0121600) | - | 2193210..2193539 (-) | 330 | WP_000138304.1 | hypothetical protein | - |
| IDSSA_RS11160 (IDSSA_0121610) | - | 2193629..2193790 (-) | 162 | WP_000066017.1 | DUF1270 domain-containing protein | - |
| IDSSA_RS11165 (IDSSA_0121620) | - | 2193787..2194107 (-) | 321 | WP_001120197.1 | DUF771 domain-containing protein | - |
| IDSSA_RS11170 (IDSSA_0121630) | - | 2194166..2194798 (+) | 633 | WP_000275058.1 | hypothetical protein | - |
| IDSSA_RS11175 (IDSSA_0121640) | - | 2194813..2194953 (-) | 141 | WP_000939496.1 | hypothetical protein | - |
| IDSSA_RS11180 (IDSSA_0121650) | - | 2194984..2195181 (-) | 198 | WP_001148861.1 | hypothetical protein | - |
| IDSSA_RS11185 (IDSSA_0121660) | - | 2195197..2195946 (-) | 750 | WP_001148653.1 | phage antirepressor KilAC domain-containing protein | - |
| IDSSA_RS11190 (IDSSA_0121670) | - | 2195997..2196326 (+) | 330 | WP_000180411.1 | hypothetical protein | - |
| IDSSA_RS11195 (IDSSA_0121680) | - | 2196315..2196530 (-) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| IDSSA_RS11200 (IDSSA_0121690) | - | 2196546..2196809 (-) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IDSSA_RS11205 | - | 2196806..2196979 (-) | 174 | WP_001801500.1 | hypothetical protein | - |
| IDSSA_RS11210 (IDSSA_0121700) | - | 2196942..2197655 (+) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IDSSA_RS11215 (IDSSA_0121710) | - | 2197671..2198603 (+) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IDSSA_RS11220 (IDSSA_0121720) | - | 2198609..2198950 (+) | 342 | WP_000591749.1 | hypothetical protein | - |
| IDSSA_RS11225 (IDSSA_0121730) | - | 2199154..2199336 (+) | 183 | WP_000705248.1 | hypothetical protein | - |
| IDSSA_RS11230 (IDSSA_0121740) | - | 2199436..2199900 (+) | 465 | WP_000825947.1 | hypothetical protein | - |
| IDSSA_RS11235 (IDSSA_0121750) | - | 2199959..2200996 (+) | 1038 | WP_000857191.1 | site-specific integrase | - |
| IDSSA_RS11240 (IDSSA_0121760) | sph | 2201053..2201877 (+) | 825 | Protein_2181 | sphingomyelin phosphodiesterase | - |
| IDSSA_RS11245 (IDSSA_0121770) | lukG | 2202115..2203131 (-) | 1017 | WP_000595324.1 | bi-component leukocidin LukGH subunit G | - |
| IDSSA_RS11250 (IDSSA_0121780) | lukH | 2203153..2204208 (-) | 1056 | WP_000791407.1 | bi-component leukocidin LukGH subunit H | - |
| IDSSA_RS11255 (IDSSA_0121790) | - | 2204643..2205866 (+) | 1224 | WP_000206638.1 | ArgE/DapE family deacylase | - |
| IDSSA_RS11260 (IDSSA_0121800) | - | 2206238..2207081 (-) | 844 | Protein_2185 | class I SAM-dependent methyltransferase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=90708 IDSSA_RS11125 WP_000934759.1 2188654..2189124(-) (ssbA) [Staphylococcus aureus strain IDSA1]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=90708 IDSSA_RS11125 WP_000934759.1 2188654..2189124(-) (ssbA) [Staphylococcus aureus strain IDSA1]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |