Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   ABMW40_RS00100 Genome accession   NZ_CP158049
Coordinates   20816..21841 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain 2-216     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 15816..26841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABMW40_RS00075 (ABMW40_00075) - 16004..16321 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  ABMW40_RS00080 (ABMW40_00080) trkA 16470..17843 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  ABMW40_RS00085 (ABMW40_00085) rsmB 17871..19175 (-) 1305 WP_003161949.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  ABMW40_RS00090 (ABMW40_00090) fmt 19172..20116 (-) 945 WP_003131369.1 methionyl-tRNA formyltransferase -
  ABMW40_RS00095 (ABMW40_00095) def 20171..20677 (-) 507 WP_003107059.1 peptide deformylase -
  ABMW40_RS00100 (ABMW40_00100) tsaP 20816..21841 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABMW40_RS00105 (ABMW40_00105) dprA 21976..23064 (+) 1089 WP_003114641.1 DNA-processing protein DprA Machinery gene
  ABMW40_RS00110 (ABMW40_00110) - 23105..23662 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  ABMW40_RS00115 (ABMW40_00115) - 23672..24649 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  ABMW40_RS00120 (ABMW40_00120) hemF 24840..25757 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  ABMW40_RS00125 (ABMW40_00125) aroE 25815..26639 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=907035 ABMW40_RS00100 WP_003097294.1 20816..21841(+) (tsaP) [Pseudomonas aeruginosa strain 2-216]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=907035 ABMW40_RS00100 WP_003097294.1 20816..21841(+) (tsaP) [Pseudomonas aeruginosa strain 2-216]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCATCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTTAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAACTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393