Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   SH592_RS11770 Genome accession   NZ_CP139053
Coordinates   2466875..2467210 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain Y-4     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2461875..2472210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SH592_RS11750 (SH592_11750) gcvT 2462481..2463581 (-) 1101 WP_031378949.1 glycine cleavage system aminomethyltransferase GcvT -
  SH592_RS11755 (SH592_11755) - 2464005..2465675 (+) 1671 WP_015417810.1 DEAD/DEAH box helicase -
  SH592_RS11760 (SH592_11760) - 2465697..2466491 (+) 795 WP_007408330.1 YqhG family protein -
  SH592_RS11765 (SH592_11765) sinI 2466668..2466841 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  SH592_RS11770 (SH592_11770) sinR 2466875..2467210 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  SH592_RS11775 (SH592_11775) tasA 2467258..2468043 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  SH592_RS11780 (SH592_11780) sipW 2468108..2468692 (-) 585 WP_015240205.1 signal peptidase I SipW -
  SH592_RS11785 (SH592_11785) tapA 2468664..2469335 (-) 672 WP_015417813.1 amyloid fiber anchoring/assembly protein TapA -
  SH592_RS11790 (SH592_11790) - 2469594..2469923 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  SH592_RS11795 (SH592_11795) - 2469963..2470142 (-) 180 WP_003153093.1 YqzE family protein -
  SH592_RS11800 (SH592_11800) comGG 2470199..2470576 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  SH592_RS11805 (SH592_11805) comGF 2470577..2471077 (-) 501 WP_258548905.1 competence type IV pilus minor pilin ComGF -
  SH592_RS11810 (SH592_11810) comGE 2470986..2471300 (-) 315 WP_031378943.1 competence type IV pilus minor pilin ComGE -
  SH592_RS11815 (SH592_11815) comGD 2471284..2471721 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  SH592_RS11820 (SH592_11820) comGC 2471711..2472019 (-) 309 WP_015417818.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=907032 SH592_RS11770 WP_003153104.1 2466875..2467210(+) (sinR) [Bacillus velezensis strain Y-4]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=907032 SH592_RS11770 WP_003153104.1 2466875..2467210(+) (sinR) [Bacillus velezensis strain Y-4]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991