Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SDC64_RS00850 Genome accession   NZ_CP139048
Coordinates   184774..185355 (+) Length   193 a.a.
NCBI ID   WP_004641476.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain JS-1us     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 179774..190355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDC64_RS00825 (SDC64_00825) - 180164..180736 (+) 573 WP_320532823.1 DUF2939 domain-containing protein -
  SDC64_RS00830 (SDC64_00830) - 180792..181145 (+) 354 WP_004641483.1 DUF1304 domain-containing protein -
  SDC64_RS00835 (SDC64_00835) tenA 181297..181971 (-) 675 WP_320532824.1 thiaminase II -
  SDC64_RS00840 (SDC64_00840) - 182144..183226 (+) 1083 WP_004641480.1 DUF475 domain-containing protein -
  SDC64_RS00845 (SDC64_00845) - 183358..184722 (+) 1365 WP_004641478.1 MFS transporter -
  SDC64_RS00850 (SDC64_00850) ssb 184774..185355 (+) 582 WP_004641476.1 single-stranded DNA-binding protein Machinery gene
  SDC64_RS00855 (SDC64_00855) - 185757..187190 (+) 1434 WP_075314455.1 amino acid permease -
  SDC64_RS00860 (SDC64_00860) - 187248..188750 (-) 1503 WP_005088642.1 PLP-dependent aminotransferase family protein -
  SDC64_RS00865 (SDC64_00865) gabT 188905..190197 (+) 1293 WP_320532825.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21211.89 Da        Isoelectric Point: 6.7311

>NTDB_id=906934 SDC64_RS00850 WP_004641476.1 184774..185355(+) (ssb) [Acinetobacter haemolyticus strain JS-1us]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHNNNQNGYGQGGGFNGGNQGNY
AGNPQAGNGFNTPKSAPQPAATAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=906934 SDC64_RS00850 WP_004641476.1 184774..185355(+) (ssb) [Acinetobacter haemolyticus strain JS-1us]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAATGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAAATGCAAAT
GCTTGATTCACGTCAGCAAAGTGAACAAAGCGGTGGTGATTTCAATCAACCACGGTTTAACAATAATCAAGGCGGTGGTT
ACCAAAACACAGGTCATAACAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGTAATCAAGGCAATTAT
GCAGGCAATCCACAAGCTGGAAATGGCTTTAATACACCAAAGTCTGCACCTCAACCTGCTGCGACAGCACCTGCTGATTT
AGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53

100

0.549
  ssb Vibrio cholerae strain A1552

44.335

100

0.466
  ssb Neisseria meningitidis MC58

38.421

98.446

0.378
  ssb Neisseria gonorrhoeae MS11

38.421

98.446

0.378