Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IDSSA_RS02080 Genome accession   NZ_AP025249
Coordinates   436013..436516 (+) Length   167 a.a.
NCBI ID   WP_000934798.1    Uniprot ID   A0A0Z0SL74
Organism   Staphylococcus aureus strain IDSA1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 431013..441516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IDSSA_RS02050 (IDSSA_0104050) - 431950..432795 (+) 846 WP_001550052.1 ParB/RepB/Spo0J family partition protein -
  IDSSA_RS02055 (IDSSA_0104060) - 432952..433833 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  IDSSA_RS02060 (IDSSA_0104070) - 433863..434066 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  IDSSA_RS02065 (IDSSA_0104080) ychF 434078..435175 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  IDSSA_RS02070 (IDSSA_0104090) - 435261..435452 (-) 192 WP_001052483.1 hypothetical protein -
  IDSSA_RS02075 (IDSSA_0104100) rpsF 435696..435992 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  IDSSA_RS02080 (IDSSA_0104110) ssbA 436013..436516 (+) 504 WP_000934798.1 single-stranded DNA-binding protein Machinery gene
  IDSSA_RS02085 (IDSSA_0104120) rpsR 436568..436810 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  IDSSA_RS02090 (IDSSA_0104130) - 437076..438014 (-) 939 WP_001822249.1 Abi family protein -
  IDSSA_RS02095 - 438053..438754 (-) 702 Protein_416 tyrosine-type recombinase/integrase -
  IDSSA_RS02100 (IDSSA_0104160) selX 438960..439571 (+) 612 WP_000475326.1 staphylococcal enterotoxin-like toxin X -
  IDSSA_RS02105 (IDSSA_0104170) - 439940..440308 (+) 369 WP_000849177.1 YxeA family protein -
  IDSSA_RS02110 (IDSSA_0104180) - 440489..441061 (+) 573 WP_000769720.1 PepSY domain-containing protein -
  IDSSA_RS02115 (IDSSA_0104190) - 441199..441462 (-) 264 WP_001055897.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18571.18 Da        Isoelectric Point: 4.7305

>NTDB_id=90675 IDSSA_RS02080 WP_000934798.1 436013..436516(+) (ssbA) [Staphylococcus aureus strain IDSA1]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVMCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=90675 IDSSA_RS02080 WP_000934798.1 436013..436516(+) (ssbA) [Staphylococcus aureus strain IDSA1]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTATGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.386

100

0.557
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment