Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IDSSA_RS01620 | Genome accession | NZ_AP025249 |
| Coordinates | 358657..359127 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain IDSA1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 348072..390568 | 358657..359127 | within | 0 |
Gene organization within MGE regions
Location: 348072..390568
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IDSSA_RS01535 (IDSSA_0103010) | - | 348072..349277 (-) | 1206 | WP_000264186.1 | tyrosine-type recombinase/integrase | - |
| IDSSA_RS01540 (IDSSA_0103020) | - | 349388..349567 (+) | 180 | WP_000337826.1 | hypothetical protein | - |
| IDSSA_RS01545 (IDSSA_0103030) | - | 349547..350479 (-) | 933 | WP_000392181.1 | hypothetical protein | - |
| IDSSA_RS01550 (IDSSA_0103040) | - | 350511..351236 (-) | 726 | WP_000661437.1 | PH domain-containing protein | - |
| IDSSA_RS01555 (IDSSA_0103050) | - | 351264..351938 (-) | 675 | WP_000775187.1 | ImmA/IrrE family metallo-endopeptidase | - |
| IDSSA_RS01560 (IDSSA_0103060) | - | 351955..352287 (-) | 333 | WP_001055143.1 | helix-turn-helix domain-containing protein | - |
| IDSSA_RS01565 (IDSSA_0103070) | - | 352550..352744 (+) | 195 | WP_000108122.1 | helix-turn-helix transcriptional regulator | - |
| IDSSA_RS01570 (IDSSA_0103080) | - | 352744..353511 (+) | 768 | WP_001002757.1 | phage antirepressor Ant | - |
| IDSSA_RS01575 (IDSSA_0103090) | tscA | 353512..353736 (+) | 225 | WP_000187184.1 | type II toxin-antitoxin system antitoxin TscA | - |
| IDSSA_RS01580 | - | 353776..353875 (+) | 100 | Protein_313 | hypothetical protein | - |
| IDSSA_RS01585 (IDSSA_0103110) | - | 354024..354287 (+) | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| IDSSA_RS01590 (IDSSA_0103120) | - | 354299..354460 (+) | 162 | WP_000066021.1 | DUF1270 family protein | - |
| IDSSA_RS01595 (IDSSA_0103130) | - | 354552..354812 (+) | 261 | WP_000291089.1 | DUF1108 family protein | - |
| IDSSA_RS01600 (IDSSA_0103140) | - | 354821..355084 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IDSSA_RS01605 (IDSSA_0103150) | - | 355093..357036 (+) | 1944 | WP_000700555.1 | AAA family ATPase | - |
| IDSSA_RS01610 (IDSSA_0103160) | - | 357038..357958 (+) | 921 | WP_000180598.1 | recombinase RecT | - |
| IDSSA_RS01615 (IDSSA_0103170) | - | 358039..358656 (+) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| IDSSA_RS01620 (IDSSA_0103180) | ssbA | 358657..359127 (+) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| IDSSA_RS01625 (IDSSA_0103190) | - | 359157..360050 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| IDSSA_RS01630 (IDSSA_0103200) | - | 360057..360275 (+) | 219 | WP_000338528.1 | hypothetical protein | - |
| IDSSA_RS01635 (IDSSA_0103210) | - | 360284..360688 (+) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IDSSA_RS01640 (IDSSA_0103220) | - | 360701..361073 (+) | 373 | Protein_325 | SA1788 family PVL leukocidin-associated protein | - |
| IDSSA_RS01645 (IDSSA_0103230) | - | 361073..361330 (+) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| IDSSA_RS01650 (IDSSA_0103240) | - | 361333..361575 (+) | 243 | WP_000221871.1 | SAV1978 family virulence-associated passenger protein | - |
| IDSSA_RS01655 (IDSSA_0103250) | - | 361588..361989 (+) | 402 | WP_000695762.1 | hypothetical protein | - |
| IDSSA_RS01660 (IDSSA_0103260) | - | 361986..362333 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| IDSSA_RS01665 (IDSSA_0103270) | - | 362330..362638 (+) | 309 | WP_000144710.1 | hypothetical protein | - |
| IDSSA_RS01670 (IDSSA_0103280) | - | 362631..362879 (+) | 249 | WP_001065026.1 | DUF1024 family protein | - |
| IDSSA_RS01675 (IDSSA_0103290) | - | 362872..363408 (+) | 537 | WP_000185663.1 | dUTPase | - |
| IDSSA_RS01680 (IDSSA_0103300) | - | 363445..363645 (+) | 201 | WP_000195821.1 | DUF1381 domain-containing protein | - |
| IDSSA_RS01685 (IDSSA_0103310) | - | 363744..363980 (+) | 237 | WP_000608279.1 | hypothetical protein | - |
| IDSSA_RS01690 (IDSSA_0103320) | rinB | 363973..364146 (+) | 174 | WP_000591891.1 | transcriptional activator RinB | - |
| IDSSA_RS01695 (IDSSA_0103330) | - | 364147..364512 (+) | 366 | WP_000989954.1 | hypothetical protein | - |
| IDSSA_RS01700 (IDSSA_0103340) | - | 364513..364659 (+) | 147 | WP_000989960.1 | hypothetical protein | - |
| IDSSA_RS01705 (IDSSA_0103350) | - | 364683..365123 (+) | 441 | WP_000162703.1 | RinA family phage transcriptional activator | - |
| IDSSA_RS01710 (IDSSA_0103360) | - | 365434..365928 (+) | 495 | WP_000594082.1 | terminase small subunit | - |
| IDSSA_RS01715 (IDSSA_0103370) | - | 365921..367129 (+) | 1209 | WP_001606760.1 | PBSX family phage terminase large subunit | - |
| IDSSA_RS01720 (IDSSA_0103380) | - | 367143..368561 (+) | 1419 | WP_000283553.1 | phage portal protein | - |
| IDSSA_RS01725 (IDSSA_0103390) | - | 368500..369483 (+) | 984 | WP_014532414.1 | phage head morphogenesis protein | - |
| IDSSA_RS01730 (IDSSA_0103400) | - | 369485..369691 (+) | 207 | WP_000346033.1 | hypothetical protein | - |
| IDSSA_RS01735 (IDSSA_0103410) | - | 369796..370392 (+) | 597 | WP_000366932.1 | phage scaffolding protein | - |
| IDSSA_RS01740 (IDSSA_0103420) | - | 370413..371237 (+) | 825 | WP_001135558.1 | N4-gp56 family major capsid protein | - |
| IDSSA_RS01745 (IDSSA_0103430) | - | 371254..371580 (+) | 327 | WP_000278799.1 | Rho termination factor N-terminal domain-containing protein | - |
| IDSSA_RS01750 (IDSSA_0103440) | - | 371580..371894 (+) | 315 | WP_000338935.1 | phage head-tail connector protein | - |
| IDSSA_RS01755 (IDSSA_0103450) | - | 371887..372222 (+) | 336 | WP_017431444.1 | phage head closure protein | - |
| IDSSA_RS01760 (IDSSA_0103460) | - | 372209..372622 (+) | 414 | WP_001151335.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| IDSSA_RS01765 (IDSSA_0103470) | - | 372635..373072 (+) | 438 | WP_000270196.1 | DUF3168 domain-containing protein | - |
| IDSSA_RS01770 (IDSSA_0103480) | - | 373059..373619 (+) | 561 | WP_000046067.1 | hypothetical protein | - |
| IDSSA_RS01775 (IDSSA_0103490) | - | 373681..374175 (+) | 495 | WP_000141082.1 | tail assembly chaperone | - |
| IDSSA_RS01780 (IDSSA_0103500) | - | 374196..374537 (+) | 342 | WP_001580347.1 | hypothetical protein | - |
| IDSSA_RS01785 (IDSSA_0103510) | - | 374540..377509 (+) | 2970 | WP_000414234.1 | terminase | - |
| IDSSA_RS01790 (IDSSA_0103520) | - | 377524..378459 (+) | 936 | WP_000560193.1 | phage tail domain-containing protein | - |
| IDSSA_RS01795 (IDSSA_0103530) | - | 378470..380353 (+) | 1884 | WP_001144702.1 | SGNH/GDSL hydrolase family protein | - |
| IDSSA_RS01800 (IDSSA_0103540) | - | 380366..382264 (+) | 1899 | WP_000323252.1 | hypothetical protein | - |
| IDSSA_RS01805 (IDSSA_0103550) | - | 382264..384087 (+) | 1824 | WP_000259636.1 | phage baseplate upper protein | - |
| IDSSA_RS01810 (IDSSA_0103560) | - | 384087..384464 (+) | 378 | WP_000869363.1 | DUF2977 domain-containing protein | - |
| IDSSA_RS01815 (IDSSA_0103570) | - | 384474..384647 (+) | 174 | WP_015990323.1 | XkdX family protein | - |
| IDSSA_RS01820 (IDSSA_0103580) | - | 384688..384987 (+) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| IDSSA_RS01825 (IDSSA_0103590) | - | 385124..386998 (+) | 1875 | WP_000524040.1 | glucosaminidase domain-containing protein | - |
| IDSSA_RS01830 (IDSSA_0103600) | - | 387011..388249 (+) | 1239 | WP_000276640.1 | BppU family phage baseplate upper protein | - |
| IDSSA_RS01835 (IDSSA_0103610) | - | 388254..388649 (+) | 396 | WP_000387945.1 | hypothetical protein | - |
| IDSSA_RS01840 (IDSSA_0103620) | - | 388705..389142 (+) | 438 | WP_000354132.1 | phage holin | - |
| IDSSA_RS01845 (IDSSA_0103630) | - | 389123..390568 (+) | 1446 | WP_001148131.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=90674 IDSSA_RS01620 WP_000934759.1 358657..359127(+) (ssbA) [Staphylococcus aureus strain IDSA1]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=90674 IDSSA_RS01620 WP_000934759.1 358657..359127(+) (ssbA) [Staphylococcus aureus strain IDSA1]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |