Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SIC12_RS19050 Genome accession   NZ_CP138985
Coordinates   4123842..4124381 (+) Length   179 a.a.
NCBI ID   WP_058090011.1    Uniprot ID   A0A142FTP3
Organism   Marinobacter sp. MIT1358     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4118842..4129381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC12_RS19035 rplQ 4118950..4119348 (+) 399 WP_058090008.1 50S ribosomal protein L17 -
  SIC12_RS19040 uvrA 4119415..4122234 (-) 2820 WP_058090009.1 excinuclease ABC subunit UvrA -
  SIC12_RS19045 - 4122415..4123785 (+) 1371 WP_058090010.1 MFS transporter -
  SIC12_RS19050 ssb 4123842..4124381 (+) 540 WP_058090011.1 single-stranded DNA-binding protein Machinery gene
  SIC12_RS19055 - 4124594..4125517 (+) 924 WP_227513183.1 hypothetical protein -
  SIC12_RS19060 - 4125514..4126134 (+) 621 WP_227513184.1 PilN domain-containing protein -
  SIC12_RS19065 gspM 4126131..4126808 (+) 678 WP_058090012.1 type II secretion system protein GspM -
  SIC12_RS19070 - 4126810..4127139 (+) 330 WP_058090092.1 hypothetical protein -
  SIC12_RS19075 mshL 4127136..4128848 (+) 1713 WP_058090013.1 pilus (MSHA type) biogenesis protein MshL -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19761.84 Da        Isoelectric Point: 4.9464

>NTDB_id=906511 SIC12_RS19050 WP_058090011.1 4123842..4124381(+) (ssb) [Marinobacter sp. MIT1358]
MARGINKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPRTEWHRVVLFGKVAEVAGQYLRKGSKVYIE
GRLQTRKWQNKEGQDVYTTEIVVDINGQMQMLDSRGGEGGMNQGAPQGRPQQQPQSQYNAPPQQQGGQAQQPSGGYNPQG
QQSGGMPEPIDDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=906511 SIC12_RS19050 WP_058090011.1 4123842..4124381(+) (ssb) [Marinobacter sp. MIT1358]
ATGGCACGAGGCATTAACAAGGTAATTCTCATTGGTAATCTGGGCCAGGACCCGGATACCCGCTATACCCCGAATGGCAA
CGCGGTTGTGAATCTCAACCTGGCTACCGATGAAAGTTACAAGGATCGCCAGACTGGCCAGATGGTACCGAGAACCGAAT
GGCACCGGGTTGTGCTGTTCGGCAAGGTGGCGGAAGTGGCCGGCCAGTACCTGCGTAAAGGTTCCAAGGTGTATATCGAG
GGTCGCCTGCAAACCCGCAAGTGGCAGAATAAAGAAGGACAGGACGTATACACCACCGAGATTGTGGTAGACATCAACGG
CCAGATGCAGATGCTCGACAGCCGCGGTGGCGAAGGTGGCATGAATCAGGGCGCTCCCCAGGGCCGGCCGCAGCAGCAAC
CCCAATCTCAGTATAATGCTCCGCCCCAGCAGCAGGGTGGCCAGGCTCAGCAGCCGTCCGGGGGTTATAACCCTCAGGGG
CAGCAGAGCGGTGGCATGCCGGAGCCGATTGATGATTTTGATGACGACATTCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142FTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.839

100

0.57
  ssb Glaesserella parasuis strain SC1401

51.872

100

0.542
  ssb Neisseria meningitidis MC58

44.262

100

0.453
  ssb Neisseria gonorrhoeae MS11

44.262

100

0.453