Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SIC11_RS19495 Genome accession   NZ_CP138984
Coordinates   4256032..4256556 (-) Length   174 a.a.
NCBI ID   WP_412558217.1    Uniprot ID   -
Organism   Thalassospira sp. MIT1370     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4251032..4261556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC11_RS19465 - 4251709..4251984 (+) 276 WP_114113258.1 hypothetical protein -
  SIC11_RS19470 - 4251962..4252417 (+) 456 WP_286886114.1 NUDIX hydrolase -
  SIC11_RS19475 rpoH 4252539..4253408 (-) 870 WP_068519083.1 RNA polymerase sigma factor RpoH -
  SIC11_RS19480 - 4254030..4254554 (+) 525 WP_412558214.1 YchJ family protein -
  SIC11_RS19485 - 4254535..4254954 (-) 420 WP_412558215.1 NUDIX domain-containing protein -
  SIC11_RS19490 - 4255040..4255921 (-) 882 WP_412558216.1 hypothetical protein -
  SIC11_RS19495 ssb 4256032..4256556 (-) 525 WP_412558217.1 single-stranded DNA-binding protein Machinery gene
  SIC11_RS19500 - 4256615..4257088 (-) 474 WP_101246450.1 GAF domain-containing protein -
  SIC11_RS19505 - 4257232..4258302 (-) 1071 WP_412558218.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -
  SIC11_RS19510 ugpE 4258361..4259215 (-) 855 WP_068519088.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
  SIC11_RS19515 - 4259225..4260103 (-) 879 WP_068519089.1 ABC transporter permease subunit -
  SIC11_RS19520 - 4260187..4261485 (-) 1299 WP_101246200.1 extracellular solute-binding protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18336.01 Da        Isoelectric Point: 5.0346

>NTDB_id=906489 SIC11_RS19495 WP_412558217.1 4256032..4256556(-) (ssb) [Thalassospira sp. MIT1370]
MAGSVNKVILVGNLGRDPEIRFTQAGKKIANFSIATSEQWRDRQSGERRERTEWHRIVVFNEGLADVVERFVKKGSKLYI
EGQLRTRKWQGQDGKDNYTTEVVLEGFNSNLTMLDNRGEGGGSMGGGSSSGGGYGGSDNGGFGGGSDAGWGNGGSSGGGS
APAGAPDLDDEIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=906489 SIC11_RS19495 WP_412558217.1 4256032..4256556(-) (ssb) [Thalassospira sp. MIT1370]
ATGGCTGGTAGTGTCAATAAAGTCATTCTCGTCGGGAACCTCGGGCGCGATCCTGAAATCCGGTTCACCCAGGCCGGTAA
GAAAATCGCCAATTTCAGCATTGCGACCTCCGAACAGTGGCGCGACCGTCAGTCTGGAGAGCGCCGCGAGCGTACCGAAT
GGCATCGCATTGTAGTCTTCAACGAAGGCCTCGCAGACGTTGTCGAACGCTTCGTAAAAAAAGGCAGCAAGCTTTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGCAGGGACAGGACGGCAAGGACAACTATACGACCGAAGTCGTGCTTGAAGGTTT
TAACTCCAACCTGACCATGCTTGATAACCGCGGCGAAGGTGGCGGCAGCATGGGTGGCGGTTCATCATCCGGCGGCGGTT
ATGGCGGTTCTGACAATGGCGGCTTCGGCGGCGGGTCTGACGCGGGCTGGGGTAACGGTGGATCGTCGGGCGGCGGTTCC
GCACCGGCCGGCGCACCGGACCTGGATGACGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.92

100

0.483
  ssb Vibrio cholerae strain A1552

42.938

100

0.437
  ssb Neisseria meningitidis MC58

39.344

100

0.414
  ssb Neisseria gonorrhoeae MS11

38.798

100

0.408