Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SIB92_RS03045 Genome accession   NZ_CP138921
Coordinates   627627..628154 (-) Length   175 a.a.
NCBI ID   WP_412550225.1    Uniprot ID   -
Organism   Shimia sp. MIT1388     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 622627..633154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIB92_RS03025 - 622674..623222 (+) 549 WP_412554430.1 shikimate kinase -
  SIB92_RS03030 aroB 623226..624338 (+) 1113 WP_412554431.1 3-dehydroquinate synthase -
  SIB92_RS03035 pepT 624389..625633 (-) 1245 WP_412554432.1 peptidase T -
  SIB92_RS03040 - 625760..627373 (-) 1614 WP_412554433.1 peptidoglycan-binding domain-containing protein -
  SIB92_RS03045 ssb 627627..628154 (-) 528 WP_412550225.1 single-stranded DNA-binding protein Machinery gene
  SIB92_RS03050 - 628360..628944 (+) 585 WP_412554434.1 lytic transglycosylase domain-containing protein -
  SIB92_RS03055 - 628968..629852 (-) 885 WP_412554435.1 helix-turn-helix domain-containing protein -
  SIB92_RS03060 miaA 629973..630854 (-) 882 WP_412554436.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  SIB92_RS03065 pyrH 630974..631708 (+) 735 WP_412550228.1 UMP kinase -
  SIB92_RS03070 frr 631806..632369 (+) 564 WP_412554437.1 ribosome recycling factor -
  SIB92_RS03075 - 632375..633097 (+) 723 WP_412554438.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18386.09 Da        Isoelectric Point: 5.3024

>NTDB_id=905920 SIB92_RS03045 WP_412550225.1 627627..628154(-) (ssb) [Shimia sp. MIT1388]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRIAEQYLRKGSKVYV
EGKLQTRKWQDQSGQDRYSTEVVLQGFDGVLTMLDGRSGGGDGGGFGGGGGGYDQGGGGYGGGYDQGGGGNFGGGGGGNQ
GGPAPSRDMDDEIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=905920 SIB92_RS03045 WP_412550225.1 627627..628154(-) (ssb) [Shimia sp. MIT1388]
ATGGCCGGATCGGTGAACAAAGTAATCCTTATTGGCAACCTGGGGCGCGACCCCGAGGTGCGCTCCTTCCAGAATGGCGG
CAAGGTCTGCAACCTGCGGATCGCCACCTCTGAAACCTGGAAAGATCGCAACACCGGCGAGCGTCGCGAGAAAACCGAAT
GGCACTCCGTGGCCATCTTCCAGGAAGGCCTCGTACGCATTGCCGAGCAGTACCTGCGCAAAGGCTCCAAAGTCTACGTC
GAAGGCAAGCTGCAAACCCGCAAATGGCAGGACCAATCCGGCCAAGACCGCTACTCCACCGAGGTGGTGTTGCAAGGCTT
TGACGGCGTTCTGACAATGCTCGACGGCCGCTCCGGCGGTGGTGACGGCGGCGGCTTTGGTGGCGGTGGCGGCGGCTACG
ATCAAGGCGGTGGCGGCTACGGCGGCGGTTACGACCAAGGCGGCGGCGGCAACTTCGGTGGCGGCGGTGGCGGCAACCAG
GGCGGCCCAGCCCCAAGCCGTGACATGGACGACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.356

100

0.571
  ssb Vibrio cholerae strain A1552

52

100

0.52
  ssb Neisseria gonorrhoeae MS11

41.935

100

0.446
  ssb Neisseria meningitidis MC58

41.398

100

0.44