Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SIC15_RS03530 Genome accession   NZ_CP138917
Coordinates   762117..762641 (+) Length   174 a.a.
NCBI ID   WP_069185089.1    Uniprot ID   A0A1E3C5N3
Organism   Marinobacter sp. MIT932201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 757117..767641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC15_RS03520 uvrA 757680..760502 (-) 2823 WP_349343837.1 excinuclease ABC subunit UvrA -
  SIC15_RS03525 - 760689..762059 (+) 1371 WP_069185088.1 MFS transporter -
  SIC15_RS03530 ssb 762117..762641 (+) 525 WP_069185089.1 single-stranded DNA-binding protein Machinery gene
  SIC15_RS03535 - 763019..764311 (+) 1293 WP_153637398.1 site-specific integrase -
  SIC15_RS03540 - 764319..765917 (+) 1599 WP_412537078.1 site-specific integrase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19012.05 Da        Isoelectric Point: 4.9464

>NTDB_id=905874 SIC15_RS03530 WP_069185089.1 762117..762641(+) (ssb) [Marinobacter sp. MIT932201]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRVVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGGEGGMNQGAPAGRPQQSGYNAPAGQQNNPPPQSGGYSNQPSQGS
MPEPVDDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=905874 SIC15_RS03530 WP_069185089.1 762117..762641(+) (ssb) [Marinobacter sp. MIT932201]
ATGGCACGAGGCGTAAACAAAGTAATTCTGATCGGTAACCTGGGACAGGACCCGGATACCCGCTACACCCCTAACGGTAA
TGCCGTTGTGAACCTGAATCTGGCAACAGACGAAAGCTACAAGGATCGTCAGACCGGGCAATTGGTGCCGAAAACCGAAT
GGCACCGGGTTGTCATGTTCGGCAAGATCGCCGAAGTGGCGGGCCAGTATCTGCGCAAGGGCTCGAAGGTCTACATTGAG
GGCAAGCTGCAGACGCGCAAATGGCAGAACAAGGAAGGTCAGGATGTCTACACCACCGAGGTTGTGGTGGATATCAACGG
CCAGATGCAGATGCTCGACAGCCGTGGCGGCGAAGGCGGTATGAATCAGGGCGCCCCGGCAGGGCGGCCTCAGCAGTCCG
GCTATAATGCCCCGGCGGGCCAACAGAACAACCCGCCACCGCAGTCTGGTGGTTACAGCAATCAGCCGTCGCAGGGCAGC
ATGCCGGAGCCGGTAGACGACTTTGACGATGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3C5N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.598
  ssb Glaesserella parasuis strain SC1401

54.348

100

0.575
  ssb Neisseria gonorrhoeae MS11

44.134

100

0.454
  ssb Neisseria meningitidis MC58

43.575

100

0.448