Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SIC19_RS06325 Genome accession   NZ_CP138916
Coordinates   1370556..1371083 (-) Length   175 a.a.
NCBI ID   WP_075195655.1    Uniprot ID   A0A1W6KDL5
Organism   Marinobacter sp. MIT930201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1365556..1376083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIC19_RS06300 mshL 1366141..1367877 (-) 1737 WP_127402087.1 pilus (MSHA type) biogenesis protein MshL -
  SIC19_RS06305 - 1367874..1368185 (-) 312 WP_127402088.1 hypothetical protein -
  SIC19_RS06310 gspM 1368187..1368885 (-) 699 WP_127402089.1 type II secretion system protein GspM -
  SIC19_RS06315 - 1368882..1369490 (-) 609 WP_127402090.1 PilN domain-containing protein -
  SIC19_RS06320 - 1369487..1370395 (-) 909 WP_127402091.1 biogenesis protein MshI -
  SIC19_RS06325 ssb 1370556..1371083 (-) 528 WP_075195655.1 single-stranded DNA-binding protein Machinery gene
  SIC19_RS06330 - 1371142..1372512 (-) 1371 WP_036203361.1 MFS transporter -
  SIC19_RS06335 uvrA 1372708..1375539 (+) 2832 WP_041335643.1 excinuclease ABC subunit UvrA -
  SIC19_RS06340 rplQ 1375613..1376011 (-) 399 WP_007153989.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18683.68 Da        Isoelectric Point: 4.9464

>NTDB_id=905853 SIC19_RS06325 WP_075195655.1 1370556..1371083(-) (ssb) [Marinobacter sp. MIT930201]
MARGVNKVILIGNLGQDPETRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRIVMFGKIAEVAGQYLRKGSKVYIE
GKLQTRKWQGQDGQDRYTTEVVVDINGQMQMLDSRGGEGGGMSQGAPAGRPQQAGNAAPAAAGPSGQQSGGGGYSQPSQG
SMPEPVDDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=905853 SIC19_RS06325 WP_075195655.1 1370556..1371083(-) (ssb) [Marinobacter sp. MIT930201]
ATGGCACGAGGCGTAAACAAGGTTATTCTGATTGGGAATCTGGGGCAGGACCCGGAAACCCGCTATACCCCGAATGGCAA
TGCGGTGGTGAACCTCAACCTTGCAACCGATGAAAGTTACAAGGACAGGCAAACAGGCCAGTTGGTGCCGAAAACCGAGT
GGCACCGGATTGTGATGTTCGGCAAGATTGCCGAGGTGGCTGGTCAGTACCTGCGTAAGGGCTCAAAGGTCTACATCGAG
GGTAAGTTACAGACGCGCAAGTGGCAGGGGCAGGATGGTCAGGATCGCTACACCACCGAGGTAGTGGTGGACATCAACGG
CCAGATGCAGATGCTCGACAGTCGTGGTGGCGAAGGCGGCGGCATGAGCCAAGGTGCTCCCGCTGGCCGTCCGCAGCAAG
CGGGCAATGCCGCGCCAGCAGCCGCGGGCCCGTCTGGGCAGCAATCCGGAGGCGGGGGCTACAGTCAGCCGTCACAAGGC
AGCATGCCGGAACCGGTTGATGACTTCGACGACGACATACCCTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6KDL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.016

100

0.617
  ssb Glaesserella parasuis strain SC1401

52.747

100

0.549
  ssb Neisseria gonorrhoeae MS11

48.889

100

0.503
  ssb Neisseria meningitidis MC58

45.81

100

0.469